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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, peroxisome, plasma membrane
BaCelLo:cytosol
MultiLoc:peroxisome
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY70305 Canola plasma membrane 24.65 100.0
AT1G10130.1 Thale cress plasma membrane 95.79 95.79
CDX94924 Canola plasma membrane 79.56 95.78
Bra031701.1-P Field mustard plasma membrane 96.99 89.22
CDY53835 Canola nucleus, plasma membrane, plastid 26.95 87.34
KRH61432 Soybean plasma membrane 83.37 83.12
Solyc07g022790.2.1 Tomato plasma membrane 32.97 83.08
VIT_18s0001g08850.t01 Wine grape plasma membrane 76.85 82.74
Solyc07g022780.2.1 Tomato mitochondrion 29.46 80.33
GSMUA_Achr6P23080_001 Banana plasma membrane 78.66 79.7
KXG37640 Sorghum plasma membrane 79.56 79.4
Zm00001d033886_P001 Maize mitochondrion 76.65 79.19
HORVU4Hr1G010200.3 Barley plasma membrane 79.06 78.9
TraesCS4A01G253500.1 Wheat peroxisome 79.06 78.9
TraesCS4D01G060900.1 Wheat plasma membrane 78.96 78.8
TraesCS4B01G061900.1 Wheat plasma membrane 78.86 78.7
Os03t0730800-01 Rice plasma membrane 49.9 77.81
CDX93457 Canola cytosol, nucleus, plasma membrane 84.47 69.96
CDY06279 Canola plasma membrane 19.14 50.93
CDX95122 Canola cytosol, plasma membrane, vacuole 14.63 47.71
CDY06268 Canola plasma membrane 47.09 46.08
CDY22720 Canola peroxisome, plasma membrane 46.19 45.78
CDY09907 Canola plasma membrane 46.69 45.78
CDY07153 Canola plasma membrane 47.7 45.16
CDY51719 Canola plasma membrane 47.49 44.97
CDY28053 Canola plasma membrane 48.1 44.12
CDY35928 Canola plasma membrane 44.89 42.99
CDY68458 Canola cytosol, peroxisome, plasma membrane 26.75 40.09
CDY61305 Canola cytosol 19.24 39.43
CDY65296 Canola cytosol 2.2 33.33
CDY19574 Canola plasma membrane 18.04 29.9
CDY65295 Canola cytosol 7.31 27.55
CDX76883 Canola plasma membrane 27.76 27.32
CDY49443 Canola plasma membrane 27.66 27.22
CDX89371 Canola plasma membrane 9.12 27.08
CDY22420 Canola plasma membrane 27.56 27.07
CDY44033 Canola plasma membrane 27.45 26.89
CDY29571 Canola plasma membrane 27.15 26.73
CDY14779 Canola plasma membrane 26.55 26.69
CDY40822 Canola plasma membrane 27.15 26.67
CDY34219 Canola plasma membrane 27.15 26.65
CDY10319 Canola plasma membrane 27.35 26.63
CDX72644 Canola plasma membrane 27.05 26.63
CDY10680 Canola plasma membrane 26.75 26.33
CDX93910 Canola plasma membrane 27.15 26.23
CDY06915 Canola plasma membrane 26.85 25.97
CDY11764 Canola plasma membrane 26.45 25.96
CDX90109 Canola plasma membrane 26.45 25.96
CDX67686 Canola cytosol, peroxisome, plasma membrane, plastid 26.65 25.95
CDY43534 Canola cytosol 27.56 25.94
CDY46716 Canola cytosol 27.76 25.82
CDY33829 Canola plasma membrane 26.45 25.76
CDY06114 Canola plasma membrane 26.45 25.76
CDY38264 Canola plasma membrane 27.66 25.72
CDX68595 Canola plasma membrane 27.25 25.71
CDY30184 Canola plasma membrane 27.35 25.71
CDX72049 Canola plasma membrane 26.35 25.66
CDY20693 Canola cytosol 27.45 25.61
CDY27537 Canola plasma membrane 27.56 25.18
CDY32412 Canola plasma membrane 27.35 25.05
CDX82212 Canola plasma membrane 27.35 25.05
CDY37311 Canola plasma membrane 27.25 24.93
CDY19575 Canola plasma membrane 27.15 24.75
CDY50072 Canola plasma membrane 27.05 24.66
CDY32902 Canola plasma membrane 27.25 24.24
CDY53981 Canola cytosol 27.66 23.83
CDX94389 Canola plasma membrane 22.95 22.34
CDX89375 Canola plasma membrane 23.05 22.31
CDY38720 Canola plasma membrane 20.54 21.51
CDX94386 Canola cytosol 22.34 21.2
CDY38719 Canola plasma membrane 19.84 20.71
CDX95120 Canola mitochondrion 0.5 3.47
Protein Annotations
Gene3D:1.20.1110.10Gene3D:2.70.150.10MapMan:24.1.2.2.1Gene3D:3.40.1110.10Gene3D:3.40.50.1000GO:A0A078GB86
UniProt:A0A078GB86InterPro:ATPase_P-typ_P_siteInterPro:ATPase_P-typ_TM_dom_sfInterPro:ATPase_P-typ_cation-transptr_CInterPro:ATPase_P-typ_cation-transptr_NInterPro:ATPase_P-typ_cyto_dom_N
InterPro:ATPase_P-typ_transduc_dom_A_sfEnsemblPlants:CDY22604ProteinID:CDY22604ProteinID:CDY22604.1ncoils:CoilGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005388GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0006810
GO:GO:0006811GO:GO:0006816GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0033017GO:GO:0070588GO:GO:0099132EnsemblPlantsGene:GSBRNA2T00019265001InterPro:HAD-like_sfInterPro:HAD_sf
InterPro:IPR023214InterPro:IPR023299InterPro:P-type_ATPase_IIAPFAM:PF00122PFAM:PF00689PFAM:PF00690
PFAM:PF00702PFAM:PF13246PRINTS:PR00119PRINTS:PR00120ScanProsite:PS00154PANTHER:PTHR42861
PANTHER:PTHR42861:SF6InterPro:P_typ_ATPaseInterPro:SERCA3SMART:SM00831SUPFAM:SSF56784SUPFAM:SSF81653
SUPFAM:SSF81660SUPFAM:SSF81665TIGRFAMs:TIGR01116TIGRFAMs:TIGR01494TMHMM:TMhelixUniParc:UPI0004EE5422
SEG:seg:::::
Description
BnaC08g42380DCalcium-transporting ATPase 3, endoplasmic reticulum-type [Source:Projected from Arabidopsis thaliana (AT1G10130) UniProtKB/Swiss-Prot;Acc:Q9SY55]
Coordinates
chrLK032134:-:9544..20771
Molecular Weight (calculated)
109036.0 Da
IEP (calculated)
5.678
GRAVY (calculated)
0.211
Length
998 amino acids
Sequence
(BLAST)
001: MEDAYARSVS EVLDFFGVDP AKGLSDSQVD HHSRMFGRNV LPEEKRTPFW KLVLKQFDDL LVKILIVAAI VSFVLALANG ETGLTAFLEP FVILLILAAN
101: AAVGVITETN AEKALEELRA YQANIATVLR NGCFSILPAS ELVPGDIVEV TVGCKLPADL RVIEMSSNEF RVDQAILTGE SCSVEKDVEC TSTTNAVYQD
201: KKNILFSGTD VVAGRGRAVV IGVGSNTAMG SIHDSMLHTD DEATPLKKKL DEFGSFLAKV IAGICVLVWV VNIGHFSDPS HGGFFKGAIH YFKIAVALAV
301: AAIPEGLPAV VTTCLALGTK KMARLNAIVR SLPSVETLGC TTVICSDKTG TLTTNMMSVS KICVVQSADH GPMISEFNVS GTTYAPEGTV FDSNDQQLDC
401: PAQSPCLHYL AMCSSLCNDS VLQYNPDKDS YEKIGESTEV ALRVLAEKVG LPGFDSMPSA LNMLSKHERA SYCNHYWENQ FKKVYVLEFT RDRKMMSVLC
501: SHKQMDVMFS KGAPESIIAR CTKLLCNSDG SVVPLTAASR AELESRFASF GDETLRCLAL AFRTVPHGQQ TISYDNENDL TFIGLVGMLD PPRKEVRDAM
601: LACMTAGIRV IVVTGDNKST AESICKKIGA FDNLVDFSGL SYTASEFERL PAMQQTTALQ RMTLFSRVEP SHKRMLVEAL QNQNEVVAMT GDGVNDAPAL
701: KKADIGIAMG SGTAVAKSAS DMVLADDNFA SIVAAVAEGR AIYNNTKQFI RYMISSNIGE VVCIFVAAVL GIPDTLAPVQ LLWVNLVTDG LPATAIGFNK
801: QDSDVMKAKP RKVGEAVVTG WLFFRYLVIG VYVGLATVAG FIWWFIYSDG GPKLTYSELM NFETCALRET SYPCSIFEDR HPSTVAMTVL VVVEMFNALN
901: NLSENQSLLV ITPRSNLWLV GSIILTMVLH MLILYVHPLA VLFSVTPLSW GEWTAVLYLS FPVIIIDEVL KFLSRNTGLR FRFRLRKMDL LPKDRRDR
Best Arabidopsis Sequence Match ( AT1G10130.1 )
(BLAST)
001: MEDAYARSVS EVLDFFGVDP TKGLSDSQVV HHSRLYGRNV LPEEKRTPFW KLVLKQFDDL LVKILIVAAI VSFVLALANG ETGLTAFLEP FVILLILAAN
101: AAVGVITETN AEKALEELRA YQANIATVLR NGCFSILPAT ELVPGDIVEV TVGCKIPADL RMIEMSSNTF RVDQAILTGE SCSVEKDVDC TLTTNAVYQD
201: KKNILFSGTD VVAGRGRAVV IGVGSNTAMG SIHDSMLQTD DEATPLKKKL DEFGSFLAKV IAGICVLVWV VNIGHFSDPS HGGFFKGAIH YFKIAVALAV
301: AAIPEGLPAV VTTCLALGTK KMARLNAIVR SLPSVETLGC TTVICSDKTG TLTTNMMSVS KICVVQSAEH GPMINEFTVS GTTYAPEGTV FDSNGMQLDL
401: PAQSPCLHHL AMCSSLCNDS ILQYNPDKDS YEKIGESTEV ALRVLAEKVG LPGFDSMPSA LNMLSKHERA SYCNHYWENQ FKKVYVLEFT RDRKMMSVLC
501: SHKQMDVMFS KGAPESIIAR CNKILCNGDG SVVPLTAAGR AELESRFYSF GDETLRCLAL AFKTVPHGQQ TISYDNENDL TFIGLVGMLD PPREEVRDAM
601: LACMTAGIRV IVVTGDNKST AESLCRKIGA FDNLVDFSGM SYTASEFERL PAVQQTLALR RMTLFSRVEP SHKRMLVEAL QKQNEVVAMT GDGVNDAPAL
701: KKADIGIAMG SGTAVAKSAS DMVLADDNFA SIVAAVAEGR AIYNNTKQFI RYMISSNIGE VVCIFVAAVL GIPDTLAPVQ LLWVNLVTDG LPATAIGFNK
801: QDSDVMKAKP RKVGEAVVTG WLFFRYLVIG VYVGLATVAG FIWWFVYSDG GPKLTYSELM NFETCALRET TYPCSIFEDR HPSTVAMTVL VVVEMFNALN
901: NLSENQSLLV ITPRSNLWLV GSIILTMLLH VLILYVHPLA VLFSVTPLSW AEWTAVLYLS FPVIIIDELL KFLSRNTGMR FRFRLRKADL LPKDRRDK
Arabidopsis Description
ECA3Calcium-transporting ATPase 3, endoplasmic reticulum-type [Source:UniProtKB/Swiss-Prot;Acc:Q9SY55]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.