CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72702	plasma membrane
CDX73202	plasma membrane
CDX87661	plasma membrane
CDX90332	plasma membrane
CDY12143	plasma membrane
CDY41977	plasma membrane
CDY53185	plasma membrane
CDY66903	plasma membrane
CDY66904	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63380.1	CDX73202	AT1G75820.1	22535420
AT3G63380.1	CDX87661	AT1G75820.1	22535420
AT3G63380.1	CDX72702	AT4G39400.1	22535420
AT3G63380.1	CDX90332	AT4G39400.1	22535420
AT3G63380.1	CDY12143	AT4G39400.1	22535420
AT3G63380.1	CDY41977	AT4G39400.1	22535420
AT3G63380.1	CDY53185	AT4G39400.1	22535420
AT3G63380.1	CDY66903	AT4G39400.1	22535420
AT3G63380.1	CDY66904	AT4G39400.1	22535420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G63380.1	Thale cress	plasma membrane	94.19	94.19
KRH67272	Soybean	peroxisome, plasma membrane	63.6	71.72
VIT_00s0179g00260.t01	Wine grape	plasma membrane, plastid	71.64	70.48
CDY40822	Canola	plasma membrane	64.38	65.45
KRG95593	Soybean	plasma membrane	67.67	65.39
CDY34219	Canola	plasma membrane	64.28	65.29
CDY10680	Canola	plasma membrane	64.09	65.29
CDY10319	Canola	plasma membrane	63.7	64.2
GSMUA_Achr7P25650_001	Banana	plasma membrane	42.5	59.32
GSMUA_Achr4P10650_001	Banana	mitochondrion	44.43	57.95
TraesCS1B01G346400.1	Wheat	plastid	54.4	55.1
TraesCS1D01G335500.1	Wheat	plastid	54.11	54.97
TraesCS1D01G335400.1	Wheat	plastid	54.11	54.8
TraesCSU01G003600.1	Wheat	plastid	53.82	54.72
EER91614	Sorghum	plasma membrane	53.53	54.64
CDY19574	Canola	plasma membrane	31.75	54.49
TraesCS1A01G332800.1	Wheat	plastid	53.82	54.3
HORVU1Hr1G076950.3	Barley	plastid	53.92	54.18
Zm00001d014166_P001	Maize	mitochondrion, plasma membrane	52.95	53.94
Os10t0418100-01	Rice	golgi	53.82	53.72
TraesCS1D01G066500.1	Wheat	mitochondrion	43.37	53.08
HORVU0Hr1G016220.1	Barley	peroxisome, plasma membrane	42.01	50.12
CDY46716	Canola	cytosol	51.5	49.58
CDY20693	Canola	cytosol	51.31	49.53
CDY30184	Canola	plasma membrane	50.92	49.53
CDY38264	Canola	plasma membrane	51.31	49.39
CDX68595	Canola	plasma membrane	50.44	49.24
CDY43534	Canola	cytosol	50.15	48.87
CDX89371	Canola	plasma membrane	15.78	48.51
CDY50072	Canola	plasma membrane	51.21	48.31
CDY19575	Canola	plasma membrane	51.21	48.31
CDY37311	Canola	plasma membrane	50.92	48.21
CDY27537	Canola	plasma membrane	50.92	48.17
CDX82212	Canola	plasma membrane	50.63	47.98
CDY32412	Canola	plasma membrane	50.63	47.98
CDY32902	Canola	plasma membrane	51.31	47.24
Zm00001d043925_P001	Maize	plasma membrane	28.65	47.13
CDY53981	Canola	cytosol	51.4	45.85
CDX90109	Canola	plasma membrane	44.24	44.94
CDY11764	Canola	plasma membrane	44.14	44.84
TraesCS4B01G007200.1	Wheat	cytosol, peroxisome, plasma membrane	42.01	44.79
CDY22420	Canola	plasma membrane	43.66	44.39
CDX72644	Canola	plasma membrane	43.56	44.38
CDY29571	Canola	plasma membrane	43.47	44.28
CDY44033	Canola	plasma membrane	43.56	44.16
CDY49443	Canola	plasma membrane	43.08	43.89
CDX76883	Canola	plasma membrane	42.98	43.79
CDY65295	Canola	cytosol	11.13	43.4
CDY14779	Canola	plasma membrane	41.53	43.2
CDX67686	Canola	cytosol, peroxisome, plasma membrane, plastid	42.79	43.12
CDY33829	Canola	plasma membrane	42.59	42.93
CDX72049	Canola	plasma membrane	42.21	42.54
CDY06114	Canola	plasma membrane	42.11	42.44
CDY06915	Canola	plasma membrane	42.11	42.15
CDY65296	Canola	cytosol	2.61	40.91
TraesCS1A01G161100.1	Wheat	mitochondrion	29.33	40.89
CDX94386	Canola	cytosol	38.33	37.64
CDX94389	Canola	plasma membrane	37.08	37.37
CDX89375	Canola	plasma membrane	37.27	37.34
CDY38720	Canola	plasma membrane	32.62	35.36
CDY38719	Canola	plasma membrane	30.88	33.37
CDY53835	Canola	nucleus, plasma membrane, plastid	9.39	31.49
CDX94924	Canola	plasma membrane	22.27	27.74
CDY06279	Canola	plasma membrane	9.97	27.47
CDY22604	Canola	plasma membrane	26.23	27.15
CDY22720	Canola	peroxisome, plasma membrane	25.94	26.61
CDY07153	Canola	plasma membrane	27.01	26.47
CDY51719	Canola	plasma membrane	26.91	26.38
CDY06268	Canola	plasma membrane	25.85	26.18
CDY09907	Canola	plasma membrane	25.56	25.93
CDX95122	Canola	cytosol, plasma membrane, vacuole	7.55	25.49
CDY28053	Canola	plasma membrane	26.72	25.37
CDY35928	Canola	plasma membrane	25.17	24.95
CDY68458	Canola	cytosol, peroxisome, plasma membrane	15.49	24.02
CDY70305	Canola	plasma membrane	5.52	23.17
CDY61305	Canola	cytosol	10.75	22.79
CDX93457	Canola	cytosol, nucleus, plasma membrane	24.78	21.24
CDX95120	Canola	mitochondrion	0.48	3.47

Protein Annotations

Gene3D:1.20.1110.10	Gene3D:2.70.150.10	MapMan:24.1.2.2.2	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	GO:A0A078DX66
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_C	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf
EnsemblPlants:CDX93910	ProteinID:CDX93910	ProteinID:CDX93910.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005388	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0070588	EnsemblPlantsGene:GSBRNA2T00156728001
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299	InterPro:P-type_ATPase_IIB	PFAM:PF00122
PFAM:PF00689	PFAM:PF00690	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154
PANTHER:PTHR24093	PANTHER:PTHR24093:SF414	InterPro:P_typ_ATPase	SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653
SUPFAM:SSF81660	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01517	TMHMM:TMhelix	UniParc:UPI0004EDC733
SEG:seg	:	:	:	:	:

Description

BnaC04g20690DCalcium-transporting ATPase 12, plasma membrane-type [Source:Projected from Arabidopsis thaliana (AT3G63380) UniProtKB/Swiss-Prot;Acc:Q9LY77]

Coordinates

chrLK031878:+:616670..619771

Molecular Weight (calculated)

113707.0 Da

IEP (calculated)

8.538

GRAVY (calculated)

0.076

Length

1033 amino acids

Sequence
(BLAST)

0001: MRDLKEYDYP ALLLNLSTTS LNKAQRRWRI AYAAIYSARA MLSLVKEIVP RRIDPKSSDA SLSLSYTPLE SGDGAMINSM PLSYVPDIDQ ERLVEIMKGK
0101: DLPGIRALGG VEGIAASLRT NATKGIHGNE QEVNRRRDLF GSNTYHKPPP KGLLFFVYDA FKDTTILILL ACAALSLGFG IKEHGLQEGW YEGGSIFVAV
0201: FLVIVVSALS NFRQERQFDK LSKISNNIKV EVLRDSRRQH ISIFDVVVGD VVFLKIGDQI PADGLFLDGH SLQVDESSMT GESDHLEVDH KDNPFLFSGT
0301: KIVDGFAKML VLSVGMSTTW GQTMSSINQD SSERTPLQVR LDTLTSTIGK LGLTVAALVL VVLLVRYFTG NTKKDGKIEY NGSKTPVDSV VNSVVRIVSV
0401: AVTIVVVAIP EGLPLAVTLT LAYSMKRMMS DQAMVRKLSA CETMGSATVI CTDKTGTLTL NEMKVTKFWL GQESIHEDST QMISSDVLDL LYQGTGLNTT
0501: GSVCVSDSGP TPEFSGSPTE KALLSWTVLN LGMDMESVKQ KYDVLRVETF NSAKKRSGVL VRRKSDNTVH VHWKGAAEMV LAMCSHYYTS TGSVDLMDST
0601: AQNRVQAIIQ GMAASSLRCI AFAHKVSLNN SGLEEGGLTL MGIVGLKDPC RPGVSKAVET CKLAGVTIKM ITGDNVFTAK AIAFECGILD HNDKDEEEAV
0701: VEGVQFRNYT DEERMQKVEK IRVMARSSPS DKLLMVKCLR LKGHVVAVTG DGTNDAPALK EADIGLSMGI QGTEVAKESS DIVILDDNFT SVATVLKWGR
0801: CVYNNIQKFI QFQLTVNVAA LVINFIAAVS AGEVPLTAVQ LLWVNLIMDT LGALALATER PTNELLKRKP VGRTEALITN VMWRNLLVQS LYQIAVLLIL
0901: QFKGMSIFNV RKEVKDTLIF NTFVLCQVFN EFNAREMEKK NVFRGIHRNR LFVGIIAITI VLQVIMVEFL KKFADTVRLN GWQWGTCIAI ASLSWPIGFF
1001: TKFIPVSETP FLGYFKNPRS LFKGSRSLSP KKP

Best Arabidopsis Sequence Match ( AT3G63380.1 )
(BLAST)

0001: MRDLKEYDYS ALLLNLTTSS LNKAQRRWRF AYAAIYSMRA MLSLVKEIVP ARIDPKTSDA SLSLSYTALE SGEGAKINSM PLSYVPAIDQ EQLVEIMKGK
0101: DLPGIQALGG VEGVAASLRT NPTKGIHGNE QEVSRRRDLF GSNTYHKPPP KGLLFFVYEA FKDLTILILL VCAIFSLGFG IKEHGIKEGW YEGGSIFVAV
0201: FLVIVVSALS NFRQERQFDK LSKISNNIKV EVLRDSRRQH ISIFDVVVGD VVFLKIGDQI PADGLFLEGH SLQVDESSMT GESDHLEVDH KDNPFLFSGT
0301: KIVDGFAQML VVSVGMSTTW GQTMSSINQD SSERTPLQVR LDTLTSTIGK IGLTVAALVL VVLLVRYFTG NTEKEGKREY NGSKTPVDTV VNSVVRIVAA
0401: AVTIVVVAIP EGLPLAVTLT LAYSMKRMMS DQAMVRKLSA CETMGSATVI CTDKTGTLTL NEMKVTKFWL GQESIHEDST KMISPDVLDL LYQGTGLNTT
0501: GSVCVSDSGS TPEFSGSPTE KALLSWTVLN LGMDMESVKQ KHEVLRVETF SSAKKRSGVL VRRKSDNTVH VHWKGAAEMV LAMCSHYYTS TGSVDLMDST
0601: AKSRIQAIIQ GMAASSLRCI AFAHKIASND SVLEEDGLTL MGIVGLKDPC RPGVSKAVET CKLAGVTIKM ITGDNVFTAK AIAFECGILD HNDKDEEDAV
0701: VEGVQFRNYT DEERMQKVDK IRVMARSSPS DKLLMVKCLR LKGHVVAVTG DGTNDAPALK EADIGLSMGI QGTEVAKESS DIVILDDNFA SVATVLKWGR
0801: CVYNNIQKFI QFQLTVNVAA LVINFIAAIS AGEVPLTAVQ LLWVNLIMDT LGALALATER PTNELLKRKP VGRTEALITN VMWRNLLVQS LYQIAVLLIL
0901: QFKGMSIFSV RKEVKDTLIF NTFVLCQVFN EFNAREMEKK NVFKGLHRNR LFIGIIAITI VLQVIMVEFL KKFADTVRLN GWQWGTCIAL ASLSWPIGFF
1001: TKFIPVSETP FLSYFKNPRS LFKGSRSPSL KKP

Arabidopsis Description

ACA12Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178VEV7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.