Factsheet for VIT_00s0179g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

cytosol 1
plastid 4
nucleus 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g01850.t01	plasma membrane
VIT_18s0001g14610.t01	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63380.1	VIT_18s0001g14610.t01	AT1G75820.1	22535420
AT3G63380.1	VIT_07s0031g01850.t01	AT4G39400.1	22535420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67272	Soybean	peroxisome, plasma membrane	67.05	76.86
VIT_05s0020g04380.t01	Wine grape	plasma membrane	71.9	74.6
VIT_05s0020g04390.t01	Wine grape	plastid	71.62	74.31
CDX93910	Canola	plasma membrane	70.48	71.64
AT3G63380.1	Thale cress	plasma membrane	70.19	71.35
VIT_05s0020g04300.t01	Wine grape	plasma membrane	70.57	70.71
VIT_05s0020g04240.t01	Wine grape	plasma membrane	63.43	69.52
KRG95593	Soybean	plasma membrane	70.48	69.22
VIT_05s0020g04280.t01	Wine grape	plastid	70.1	68.85
VIT_19s0014g01620.t01	Wine grape	plasma membrane	37.52	68.28
VIT_14s0030g02110.t01	Wine grape	plasma membrane	63.33	67.24
VIT_05s0020g04260.t01	Wine grape	mitochondrion, plasma membrane	68.19	67.17
VIT_05s0020g04350.t01	Wine grape	plasma membrane	20.19	66.67
VIT_14s0030g02090.t01	Wine grape	mitochondrion, plasma membrane	62.76	65.44
VIT_14s0030g02080.t01	Wine grape	plasma membrane	65.9	65.04
VIT_05s0020g04360.t01	Wine grape	plasma membrane	44.1	63.86
GSMUA_Achr7P25650_001	Banana	plasma membrane	43.81	62.16
GSMUA_Achr4P10650_001	Banana	mitochondrion	45.14	59.85
TraesCS1B01G346400.1	Wheat	plastid	56.95	58.63
TraesCS1D01G335500.1	Wheat	plastid	56.76	58.6
TraesCSU01G003600.1	Wheat	plastid	56.57	58.46
TraesCS1D01G335400.1	Wheat	plastid	56.76	58.43
EER91614	Sorghum	plasma membrane	56.19	58.3
TraesCS1A01G332800.1	Wheat	plastid	56.48	57.91
HORVU1Hr1G076950.3	Barley	plastid	56.67	57.88
Zm00001d014166_P001	Maize	mitochondrion, plasma membrane	55.81	57.79
TraesCS1D01G066500.1	Wheat	mitochondrion	45.62	56.75
Os10t0418100-01	Rice	golgi	55.81	56.62
HORVU0Hr1G016220.1	Barley	peroxisome, plasma membrane	44.1	53.46
Zm00001d043925_P001	Maize	plasma membrane	30.19	50.48
VIT_11s0052g00320.t01	Wine grape	plasma membrane	51.14	49.72
VIT_09s0018g02130.t01	Wine grape	plasma membrane	51.62	47.75
TraesCS4B01G007200.1	Wheat	cytosol, peroxisome, plasma membrane	43.81	47.47
VIT_18s0001g09150.t01	Wine grape	plasma membrane	42.1	43.42
VIT_13s0158g00360.t01	Wine grape	plasma membrane	42.67	43.24
VIT_07s0129g00180.t01	Wine grape	plasma membrane	41.81	43.08
TraesCS1A01G161100.1	Wheat	mitochondrion	30.29	42.91
VIT_08s0007g08960.t01	Wine grape	plasma membrane	41.24	41.92
VIT_00s0691g00010.t01	Wine grape	plasma membrane	30.29	40.82
VIT_07s0129g00110.t01	Wine grape	plasma membrane	20.76	40.75
VIT_05s0020g04270.t01	Wine grape	plasma membrane	64.86	38.11
VIT_00s0463g00030.t01	Wine grape	plasma membrane	34.95	36.12
VIT_05s0020g04220.t01	Wine grape	plastid	69.62	35.55
VIT_05s0020g04330.t01	Wine grape	mitochondrion, plasma membrane	69.43	35.54
VIT_06s0004g03900.t01	Wine grape	plasma membrane	27.62	27.33
VIT_08s0040g02830.t01	Wine grape	plasma membrane	26.76	26.43
VIT_15s0046g00040.t01	Wine grape	plasma membrane	26.19	26.17
VIT_18s0001g08850.t01	Wine grape	plasma membrane	22.95	26.0

Protein Annotations

Gene3D:1.20.1110.10	EntrezGene:100259561	wikigene:100259561	Gene3D:2.70.150.10	MapMan:24.1.2.2.2	Gene3D:3.40.1110.10
Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_C	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N
InterPro:ATPase_P-typ_transduc_dom_A_sf	ProteinID:CCB49585	ProteinID:CCB49585.1	UniProt:F6HBJ0	EMBL:FN595511	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005388	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810
GO:GO:0006811	GO:GO:0006816	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0043231	GO:GO:0070588	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
InterPro:IPR023299	EntrezGene:LOC100259561	wikigene:LOC100259561	InterPro:P-type_ATPase_IIB	PFAM:PF00122	PFAM:PF00689
PFAM:PF00690	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00121	ScanProsite:PS00154	PANTHER:PTHR24093
PANTHER:PTHR24093:SF292	InterPro:P_typ_ATPase	SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81660
SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01517	TMHMM:TMhelix	UniParc:UPI0002108767	ArrayExpress:VIT_00s0179g00260
EnsemblPlantsGene:VIT_00s0179g00260	EnsemblPlants:VIT_00s0179g00260.t01	unigene:Vvi.14397	RefSeq:XP_002274787	RefSeq:XP_002274787.1	SEG:seg

Description

Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:F6HBJ0]

Coordinates

chrUn:-:7509724..7513041

Molecular Weight (calculated)

116017.0 Da

IEP (calculated)

6.817

GRAVY (calculated)

0.048

Length

1050 amino acids

Sequence
(BLAST)

0001: MSTTITGSYF PHYDCGTIIL NVSAATFTKA QKRWRVAYVA ICSFRVLLSL SKQNVMRRKA TSTALLHSHL TVDIQPPTSY HHDDQSDLTE MVKEKDLIAL
0101: RGFGGVEGVA ATLLIDPQHG ILGNEDDVRR RRDKFGSNTY YKPPPKGLFY FVVDAFKDTT ILILLVCAAL SLGFGIKEHG PQEGWYEGGS IFVAVFLVIS
0201: VAALSNFRQE RQFDKLSKIS NNIKIDVARD GRRQEISIFD IVVGDVVFLN IGDQIPADGL FLEGHSMEVD ESSMTGESDH VEVDRERNPF LFSGSKVADG
0301: YARMLVTSVG MNTAWGEMMS SISRDTNERT PLQARLDKLT SSIGKVGLAV AFLVLVVLLI RYFTGHTKDE NGQREYNGSD KDINDVLNSV VNIVAAAVTI
0401: IVVAIPEGLP LAVTLTLAYS MKRMMADHAM VRKLSACETM GSATIICTDK TGTLTMNQMK VTKFWLGQEE MGEIPSNAIT PCILELFRQG VGLNTTGSVY
0501: RPASGAVFEF SGSPTEKAIL SWAVQELGMD VEQLKQTYSI LHVETFNSEK KRSGVSMRKN ADNTIHVHWK GAAEMVLQMC SNYYETSGTI KSMDEDSRMQ
0601: LEKIIQGMAA SSLRCIAFAY KQISEAEIEY NDDGRAHQKL NENGLTLLGI VGLKDPCRPG VKRAVEICKS AGVEIKMITG DNVFTAKAIA TECGILGSDD
0701: TEHKGAVVEG VEFRNYTHEE RMQKIDKIRV MARSSPFDKL LMVQCLKQKG EVVAVTGDGT NDAPALKEAD IGLSMGIQGT EVAKESSDIV ILDDNFTSVA
0801: TVLRWGRCVY NNIQKFIQFQ LTVNVAALVI NFISAVSAGE VPLTAVQLLW VNLIMDTLGA LALATDRPTN ELMQRPPVGR TEPLITNVMW RNLLAQALYQ
0901: IAVLLTLQFK GESIFNVDEK VNDTLIFNTF VLCQVFNEFN ARKLEKQNVF KGIHKNKLFL GIVGFTIVLQ VVMVEFLKKF ADTVNLNGLQ WAICIAIAAV
1001: SWPIGWIVKF IPVSDTPFLS YIKWAGQAFG RILHLSYLSF SSLGRGCVKR

Best Arabidopsis Sequence Match ( AT3G63380.1 )
(BLAST)

0001: MRDLKEYDYS ALLLNLTTSS LNKAQRRWRF AYAAIYSMRA MLSLVKEIVP ARIDPKTSDA SLSLSYTALE SGEGAKINSM PLSYVPAIDQ EQLVEIMKGK
0101: DLPGIQALGG VEGVAASLRT NPTKGIHGNE QEVSRRRDLF GSNTYHKPPP KGLLFFVYEA FKDLTILILL VCAIFSLGFG IKEHGIKEGW YEGGSIFVAV
0201: FLVIVVSALS NFRQERQFDK LSKISNNIKV EVLRDSRRQH ISIFDVVVGD VVFLKIGDQI PADGLFLEGH SLQVDESSMT GESDHLEVDH KDNPFLFSGT
0301: KIVDGFAQML VVSVGMSTTW GQTMSSINQD SSERTPLQVR LDTLTSTIGK IGLTVAALVL VVLLVRYFTG NTEKEGKREY NGSKTPVDTV VNSVVRIVAA
0401: AVTIVVVAIP EGLPLAVTLT LAYSMKRMMS DQAMVRKLSA CETMGSATVI CTDKTGTLTL NEMKVTKFWL GQESIHEDST KMISPDVLDL LYQGTGLNTT
0501: GSVCVSDSGS TPEFSGSPTE KALLSWTVLN LGMDMESVKQ KHEVLRVETF SSAKKRSGVL VRRKSDNTVH VHWKGAAEMV LAMCSHYYTS TGSVDLMDST
0601: AKSRIQAIIQ GMAASSLRCI AFAHKIASND SVLEEDGLTL MGIVGLKDPC RPGVSKAVET CKLAGVTIKM ITGDNVFTAK AIAFECGILD HNDKDEEDAV
0701: VEGVQFRNYT DEERMQKVDK IRVMARSSPS DKLLMVKCLR LKGHVVAVTG DGTNDAPALK EADIGLSMGI QGTEVAKESS DIVILDDNFA SVATVLKWGR
0801: CVYNNIQKFI QFQLTVNVAA LVINFIAAIS AGEVPLTAVQ LLWVNLIMDT LGALALATER PTNELLKRKP VGRTEALITN VMWRNLLVQS LYQIAVLLIL
0901: QFKGMSIFSV RKEVKDTLIF NTFVLCQVFN EFNAREMEKK NVFKGLHRNR LFIGIIAITI VLQVIMVEFL KKFADTVRLN GWQWGTCIAL ASLSWPIGFF
1001: TKFIPVSETP FLSYFKNPRS LFKGSRSPSL KKP

Arabidopsis Description

ACA12Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178VEV7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.