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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 2
  • endoplasmic reticulum 1
  • plasma membrane 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, plasma membrane
BaCelLo:cytosol
EpiLoc:endoplasmic reticulum
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES03532 plasma membrane
KXG20897 plasma membrane
OQU86764 plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G63380.1 KXG20897 AT1G75820.1 22535420
AT3G63380.1 EES03532 AT4G39400.1 22535420
AT3G63380.1 OQU86764 AT4G39400.1 22535420
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d014166_P001 Maize mitochondrion, plasma membrane 92.59 92.41
TraesCSU01G003600.1 Wheat plastid 81.42 81.1
TraesCS1D01G335500.1 Wheat plastid 81.13 80.73
TraesCS1B01G346400.1 Wheat plastid 81.32 80.69
TraesCS1A01G332800.1 Wheat plastid 81.42 80.47
TraesCS1D01G335400.1 Wheat plastid 80.63 80.0
HORVU1Hr1G076950.3 Barley plastid 81.23 79.96
Os10t0418100-01 Rice golgi 81.62 79.81
TraesCS1D01G066500.1 Wheat mitochondrion 64.33 77.13
Zm00001d043925_P001 Maize plasma membrane 46.15 74.36
HORVU0Hr1G016220.1 Barley peroxisome, plasma membrane 57.61 67.32
PGSC0003DMT400062826 Potato plasma membrane 22.92 66.48
PGSC0003DMT400096083 Potato plasma membrane 20.16 65.59
Solyc01g097400.1.1 Tomato cytosol 17.49 64.36
GSMUA_Achr4P10650_001 Banana mitochondrion 49.11 62.75
GSMUA_Achr7P25650_001 Banana plasma membrane 45.55 62.3
KRH67272 Soybean peroxisome, plasma membrane 55.43 61.24
PGSC0003DMT400097702 Potato plasma membrane 21.15 59.94
TraesCS4B01G007200.1 Wheat cytosol, peroxisome, plasma membrane 57.21 59.75
KRH41701 Soybean mitochondrion 56.32 57.81
VIT_05s0020g04390.t01 Wine grape plastid 57.41 57.41
VIT_05s0020g04380.t01 Wine grape plasma membrane 57.02 57.02
KRH29171 Soybean plasma membrane 53.26 56.68
KRG93759 Soybean plastid 57.21 56.27
CDY40822 Canola plasma membrane 56.42 56.2
VIT_00s0179g00260.t01 Wine grape plasma membrane, plastid 58.3 56.19
Bra023790.1-P Field mustard plasma membrane 56.32 56.05
AT3G22910.1 Thale cress plasma membrane 56.32 56.05
CDY34219 Canola plasma membrane 56.23 55.95
CDY10680 Canola plasma membrane 55.93 55.82
Bra033900.1-P Field mustard plasma membrane 55.93 55.76
VIT_05s0020g04240.t01 Wine grape plasma membrane 52.77 55.74
VIT_05s0020g04300.t01 Wine grape plasma membrane 57.51 55.53
VIT_14s0030g02110.t01 Wine grape plasma membrane 54.15 55.41
VIT_19s0014g01620.t01 Wine grape plasma membrane 31.42 55.11
VIT_14s0030g02090.t01 Wine grape mitochondrion, plasma membrane 54.74 55.01
CDY10319 Canola plasma membrane 55.53 54.83
VIT_05s0020g04280.t01 Wine grape plastid 57.21 54.16
PGSC0003DMT400050008 Potato plasma membrane 53.75 54.08
KRG95593 Soybean plasma membrane 57.02 53.98
VIT_14s0030g02080.t01 Wine grape plasma membrane 56.52 53.76
CDX93910 Canola plasma membrane 54.64 53.53
VIT_05s0020g04350.t01 Wine grape plasma membrane 16.8 53.46
VIT_05s0020g04260.t01 Wine grape mitochondrion, plasma membrane 56.23 53.38
PGSC0003DMT400096782 Potato plasma membrane 33.99 53.09
AT3G63380.1 Thale cress plasma membrane 54.05 52.95
PGSC0003DMT400089589 Potato plasma membrane 40.02 51.46
TraesCS1A01G161100.1 Wheat mitochondrion 36.96 50.47
VIT_05s0020g04360.t01 Wine grape plasma membrane 34.39 48.0
KXG29596 Sorghum cytosol, nucleus, plasma membrane 51.09 47.39
PGSC0003DMT400089336 Potato plasma membrane 42.19 47.18
EES12809 Sorghum plasma membrane 50.69 46.98
EER99121 Sorghum cytosol, peroxisome, plasma membrane 48.52 45.67
EES15337 Sorghum cytosol, nucleus, plasma membrane 49.01 45.63
Solyc09g082890.1.1 Tomato peroxisome, plasma membrane 17.19 45.31
PGSC0003DMT400093936 Potato plasma membrane 53.66 44.04
EES15422 Sorghum cytosol, endoplasmic reticulum, plasma membrane, plastid 42.79 42.41
EER95313 Sorghum plasma membrane 42.59 42.25
KXG23838 Sorghum plasma membrane 42.0 41.67
EES16530 Sorghum plasma membrane 42.09 41.08
OQU88174 Sorghum cytosol, nucleus, plasma membrane 41.9 40.54
EES07943 Sorghum plasma membrane 41.4 40.41
EES18436 Sorghum plasma membrane 41.3 40.12
EER93815 Sorghum plastid 40.81 39.98
PGSC0003DMT400094259 Potato plasma membrane 34.49 38.73
PGSC0003DMT400048740 Potato plastid 37.25 36.67
Solyc09g082870.1.1 Tomato plasma membrane 36.76 34.51
VIT_05s0020g04270.t01 Wine grape plasma membrane 53.66 30.39
VIT_05s0020g04220.t01 Wine grape plastid 57.11 28.11
VIT_05s0020g04330.t01 Wine grape mitochondrion, plasma membrane 56.92 28.08
EER92445 Sorghum plasma membrane 28.06 26.77
EES18919 Sorghum plasma membrane 27.47 26.28
KXG37640 Sorghum plasma membrane 25.79 26.1
Protein Annotations
Gene3D:1.20.1110.10Gene3D:2.70.150.10MapMan:24.1.2.2.2Gene3D:3.40.1110.10Gene3D:3.40.50.1000EntrezGene:8064910
InterPro:ATPase_P-typ_P_siteInterPro:ATPase_P-typ_TM_dom_sfInterPro:ATPase_P-typ_cation-transptr_CInterPro:ATPase_P-typ_cation-transptr_NInterPro:ATPase_P-typ_cyto_dom_NInterPro:ATPase_P-typ_transduc_dom_A_sf
UniProt:C5X1K4EnsemblPlants:EER91614ProteinID:EER91614ProteinID:EER91614.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005215GO:GO:0005388GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005886GO:GO:0005887GO:GO:0006810GO:GO:0006811
GO:GO:0006816GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0043231
GO:GO:0070588GO:GO:0099132InterPro:HAD-like_sfInterPro:HAD_sfInterPro:IPR023214InterPro:IPR023299
InterPro:P-type_ATPase_IIBPFAM:PF00122PFAM:PF00689PFAM:PF00690PFAM:PF00702PRINTS:PR00119
PRINTS:PR00120ScanProsite:PS00154PANTHER:PTHR24093PANTHER:PTHR24093:SF304InterPro:P_typ_ATPaseSMART:SM00831
EnsemblPlantsGene:SORBI_3001G247300SUPFAM:SSF56784SUPFAM:SSF81653SUPFAM:SSF81660SUPFAM:SSF81665TIGRFAMs:TIGR01494
TIGRFAMs:TIGR01517TMHMM:TMhelixUniParc:UPI0001A8203FRefSeq:XP_002464616.1SEG:seg:
Description
hypothetical protein
Coordinates
chr1:+:26238940..26241978
Molecular Weight (calculated)
109343.0 Da
IEP (calculated)
7.650
GRAVY (calculated)
0.127
Length
1012 amino acids
Sequence
(BLAST)
0001: MECADYLIEV GTMATAADPL RWTKQWRKAA NVIRTCHRLA RLTLTRAILC RTGSYVEIKI HDEADGAAGT SDAAPAEFSV AADDEGFRHL VKDKRHDCFR
0101: RLGGAAGIAS ALASGAETGI RGDDGDVRRR REAFGGNTYP RRKPKGFWTH VWDALSDVFL LVLLVCAAVS LGFGIKEHGL RDGWYDGVSI FLAVFLVAAV
0201: SAVSNHGQAR RFDRLANESD NIAVNVVRGG RRQEFSIFDV VVGDVVVLNI GDVVPADGVF LQGHALQVDE SSMTGEPHPV DVDADKSPFL ASGVKVIDGY
0301: GHMLVTAVGT DTAWGEMMGS ITREKTEPTP LQERLEGLTS SIGKVGIAVA VLVFAVLTAR HFTGSTRDEQ GKPTFDRQHV TFNSVFTALV GIFQQAITII
0401: VVAIPEGLPL AVTLTLAFSM KRMVKEHALV RTLSACETMG SVTAICTDKT GTLTLNQMKV TEFWVGTDRP KAAVAGAVVS LLRQGAGLNT TGSVYKPDNA
0501: SPPEISGSPT EKALLSWAVA DLGMDADALK RSCKVLHVEA FNSDKKRSGV MIRDNATGEV IAHWKGAAEM VLASCSAYVG SDGAARELDA GKRRKLEEII
0601: SEMAAASLRC IAFAYKQVDG EHSKIDDEGL TLLGFVGLKD PCRPEVRTAI EACTKAGVAV KMVTGDNVLT ARAIAMECGI ISNSDRDAIV IEGQEFRAMS
0701: PEEQLEMVDR IRVMARSLPM DKLVLVQRLK QKGHVVAVTG DGTNDAPALK EADVGLSMGI QGTEVAKESS DIVIMNDNFD TVVTATRWGR CVFNNIQKFI
0801: QFQLTVNVAA LIINFVSAVT SGKMPLSTVQ LLWVNLIMDT MGALALATDT PTKALMRRPP IGRTAPLISN AMWRNLAAQA AFQVAVLLAL QYRGREIFGV
0901: GDKANGTMIF NAFVLCQVFN EFNAREIERR NVFAGVLRNK MFLGIIAVTI AMQVIMVELL TRFAGTQRLG LGQWGVCVAI AAVSWPIGWA VKYIPVPDRP
1001: LSEILATRRK LF
Best Arabidopsis Sequence Match ( AT3G22910.1 )
(BLAST)
0001: MRRNVSDHAE KKDKVGVEVL LELPKTLSKS NKKWQLALIK LYCSRTLLNC AKHAIRKPGL FPRSLSYTAI DLDHHHGDDH FKIDTETLND LVKNKNQEKL
0101: ESLGGPNGLV SALKSNTRLG INEEGDEIQR RRSTFGSNTY TRQPSKGLFH FVVEAFKDLT ILILLGCATL SLGFGIKEHG LKEGWYDGGS IFVAVFLVVA
0201: VSAVSNFRQN RQFDKLSKVS SNIKIDVVRN GRRQEISIFD IVVGDIVCLN IGDQVPADGV FVEGHLLHVD ESSMTGESDH VEVSLTGNTF LFSGTKIADG
0301: FGKMAVTSVG MNTAWGQMMS HISRDTNEQT PLQSRLDKLT SSIGKVGLLV AFLVLLVLLI RYFTGTTKDE SGNREYNGKT TKSDEIVNAV VKMVAAAVTI
0401: IVVAIPEGLP LAVTLTLAYS MKRMMKDNAM VRKLSACETM GSATVICTDK TGTLTLNQMK VTDFWFGLES GKASSVSQRV VELFHQGVAM NTTGSVFKAK
0501: AGTEYEFSGS PTEKAILSWA VEELEMGMEK VIEEHDVVHV EGFNSEKKRS GVLMKKKGVN TENNVVHWKG AAEKILAMCS TFCDGSGVVR EMKEDDKIQF
0601: EKIIQSMAAK SLRCIAFAYS EDNEDNKKLK EEKLSLLGII GIKDPCRPGV KKAVEDCQFA GVNIKMITGD NIFTARAIAV ECGILTPEDE MNSEAVLEGE
0701: KFRNYTQEER LEKVERIKVM ARSSPFDKLL MVKCLKELGH VVAVTGDGTN DAPALKEADI GLSMGIQGTE VAKESSDIVI LDDNFASVAT VLKWGRCVYN
0801: NIQKFIQFQL TVNVAALVIN FVAAVSAGDV PLTAVQLLWV NLIMDTLGAL ALATEKPTND LMKKKPIGRV APLITNIMWR NLLAQAFYQI SVLLVLQFRG
0901: RSIFNVTEKV KNTLIFNTFV LCQVFNEFNA RSLEKKNVFK GLHKNRLFIG IIVVTVVLQV VMVEFLKRFA DTERLNLGQW GVCIAIAAAS WPIGWLVKSV
1001: PVPERHFFSY LKWKKRS
Arabidopsis Description
ACA13Putative calcium-transporting ATPase 13, plasma membrane-type [Source:UniProtKB/Swiss-Prot;Acc:Q9LIK7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.