Factsheet for TraesCS4B01G007200.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

peroxisome 1
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G245000.1	plasma membrane
TraesCS3A01G490100.1	plasma membrane
TraesCS3B01G275000.1	plasma membrane
TraesCS3B01G550900.1	plasma membrane
TraesCS3B01G551200.1	plasma membrane
TraesCS3D01G246500.1	plasma membrane
TraesCS3D01G496100.1	plasma membrane
TraesCS7A01G533800.1	plasma membrane
TraesCS7D01G521200.1	plasma membrane
TraesCSU01G171600.1	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63380.1	TraesCS7A01G533800.1	AT1G75820.1	22535420
AT3G63380.1	TraesCS7D01G521200.1	AT1G75820.1	22535420
AT3G63380.1	TraesCSU01G171600.1	AT1G75820.1	22535420
AT3G63380.1	TraesCS3A01G245000.1	AT4G39400.1	22535420
AT3G63380.1	TraesCS3A01G490100.1	AT4G39400.1	22535420
AT3G63380.1	TraesCS3B01G275000.1	AT4G39400.1	22535420
AT3G63380.1	TraesCS3B01G550900.1	AT4G39400.1	22535420
AT3G63380.1	TraesCS3B01G551200.1	AT4G39400.1	22535420
AT3G63380.1	TraesCS3D01G246500.1	AT4G39400.1	22535420
AT3G63380.1	TraesCS3D01G496100.1	AT4G39400.1	22535420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G016220.1	Barley	peroxisome, plasma membrane	57.89	64.78
TraesCS1B01G346400.1	Wheat	plastid	64.91	61.67
EER91614	Sorghum	plasma membrane	59.75	57.21
Os10t0418100-01	Rice	golgi	60.68	56.81
Zm00001d014166_P001	Maize	mitochondrion, plasma membrane	58.62	56.02
TraesCS1A01G161100.1	Wheat	mitochondrion	40.25	52.63
PGSC0003DMT400062826	Potato	plasma membrane	18.27	50.72
PGSC0003DMT400096083	Potato	plasma membrane	16.0	49.84
Zm00001d043925_P001	Maize	plasma membrane	32.09	49.52
Solyc01g097400.1.1	Tomato	cytosol	13.93	49.09
KRH67272	Soybean	peroxisome, plasma membrane	44.99	47.6
GSMUA_Achr7P25650_001	Banana	plasma membrane	35.81	46.89
PGSC0003DMT400097702	Potato	plasma membrane	16.92	45.94
GSMUA_Achr4P10650_001	Banana	mitochondrion	37.05	45.33
VIT_19s0014g01620.t01	Wine grape	plasma membrane	26.73	44.89
VIT_05s0020g04390.t01	Wine grape	plastid	46.03	44.07
KRG93759	Soybean	plastid	46.75	44.02
VIT_00s0179g00260.t01	Wine grape	plasma membrane, plastid	47.47	43.81
VIT_05s0020g04380.t01	Wine grape	plasma membrane	45.72	43.77
KRH29171	Soybean	plasma membrane	42.93	43.74
KRH41701	Soybean	mitochondrion	44.27	43.51
VIT_14s0030g02090.t01	Wine grape	mitochondrion, plasma membrane	44.99	43.3
CDY10680	Canola	plasma membrane	45.3	43.29
Bra033900.1-P	Field mustard	plasma membrane	45.2	43.15
CDY40822	Canola	plasma membrane	45.2	43.11
VIT_14s0030g02110.t01	Wine grape	plasma membrane	43.96	43.07
VIT_05s0020g04240.t01	Wine grape	plasma membrane	42.41	42.9
PGSC0003DMT400096782	Potato	plasma membrane	28.69	42.9
Bra023790.1-P	Field mustard	plasma membrane	44.89	42.77
AT3G22910.1	Thale cress	plasma membrane	44.89	42.77
CDY34219	Canola	plasma membrane	44.79	42.67
VIT_14s0030g02080.t01	Wine grape	plasma membrane	46.75	42.58
VIT_05s0020g04300.t01	Wine grape	plasma membrane	46.03	42.56
CDY10319	Canola	plasma membrane	44.99	42.54
KRG95593	Soybean	plasma membrane	46.75	42.38
CDX93910	Canola	plasma membrane	44.79	42.01
AT3G63380.1	Thale cress	plasma membrane	44.69	41.92
PGSC0003DMT400050008	Potato	plasma membrane	43.45	41.85
PGSC0003DMT400089589	Potato	plasma membrane	33.95	41.8
VIT_05s0020g04280.t01	Wine grape	plastid	46.03	41.72
VIT_05s0020g04260.t01	Wine grape	mitochondrion, plasma membrane	45.82	41.65
VIT_05s0020g04350.t01	Wine grape	plasma membrane	13.11	39.94
VIT_05s0020g04360.t01	Wine grape	plasma membrane	28.9	38.62
PGSC0003DMT400089336	Potato	plasma membrane	35.19	37.68
TraesCS6B01G180700.3	Wheat	cytosol, nucleus, plasma membrane	41.69	36.83
Solyc09g082890.1.1	Tomato	peroxisome, plasma membrane	14.55	36.72
TraesCS5B01G276500.1	Wheat	plasma membrane	40.76	36.71
TraesCS7B01G150600.7	Wheat	plasma membrane	39.73	35.55
TraesCS2B01G454000.1	Wheat	plasma membrane	39.94	35.47
PGSC0003DMT400093936	Potato	plasma membrane	43.55	34.23
TraesCS5B01G075100.2	Wheat	plasma membrane	35.4	33.63
TraesCS4B01G080300.1	Wheat	plastid	35.81	32.98
TraesCS3B01G519000.1	Wheat	plasma membrane	35.5	32.98
TraesCS4B01G258000.2	Wheat	plasma membrane	35.29	32.98
TraesCS5B01G135200.1	Wheat	plasma membrane	34.88	32.63
PGSC0003DMT400094259	Potato	plasma membrane	30.03	32.3
TraesCS1B01G324000.1	Wheat	plasma membrane	34.47	32.05
PGSC0003DMT400048740	Potato	plastid	32.71	30.84
Solyc09g082870.1.1	Tomato	plasma membrane	32.82	29.5
VIT_05s0020g04270.t01	Wine grape	plasma membrane	43.96	23.84
TraesCS4B01G061900.1	Wheat	plasma membrane	23.63	22.9
TraesCS1B01G060700.1	Wheat	golgi	23.84	21.85
VIT_05s0020g04330.t01	Wine grape	mitochondrion, plasma membrane	45.61	21.55
VIT_05s0020g04220.t01	Wine grape	plastid	45.51	21.45
TraesCS4B01G201500.2	Wheat	golgi	22.7	20.72

Protein Annotations

Gene3D:1.20.1110.10	Gene3D:2.70.150.10	MapMan:24.1.2.2.2	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_C	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299	PFAM:PF00122	PFAM:PF00689	PFAM:PF00690
PFAM:PF13246	PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154	PANTHER:PTHR24093	PANTHER:PTHR24093:SF304
InterPro:P_typ_ATPase	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81660	SUPFAM:SSF81665	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS4B01G007200	EnsemblPlants:TraesCS4B01G007200.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:+:4890248..4893157

Molecular Weight (calculated)

102609.0 Da

IEP (calculated)

7.322

GRAVY (calculated)

0.167

Length

969 amino acids

Sequence
(BLAST)

001: MDMERRADTP IAAGRQPANL WRKALDAIRA CNRLGHVVRR STSYTAITIH HHDGHSDADA DSWYPAAAAA AADVDGGSLK RLLKEMDEEC FRRLGGGAGV
101: AAKLASHPER GIAGDADDVR RRKADFGVNA CPKPEFKSFF GHVRDALSDV FLIALLVCSA VSLGVGIKEH GLKDGWYDGA SLFLAVFLVS SLTAVCSHRQ
201: ARRADKLASE SADTVVTVVR AARRQEVSTF DVVVGDVVIL RSGDAVPADG VLLHGHGLRV DEPHPGPVEI QAERNPFLAS GVKVLDGHGS MLVTAVGTDT
301: SLGEALRSHT DPHPATLQER LEGHTSTVGK VADAVAAVAF TVLTARHFTG CGTGMMPLLD KGVALAATLM LTLSMKPVVM DNALVHRLSA LETMASVTAI
401: CADKTGTLTL NQMSVAEFWV GAEQPSSATA IAGGVVNLLR QGAGLNTTGS VYMPDNASPP EISGSPTEKA LLSWAVACLG MDAATLRRSF SVLEVEAFDS
501: HRKHSRAVIR DNANGVVLAH WKGAADVVLA GCSMYVDTRG DARELGVEQR NMLEKVSNDM GARGLRCIAF ACKQVHRTEP SEIDDEAGLT LLGLVGLHDP
601: CRPEVKAATE ACTRAGVAVK MVTGDNIPTA CAAANGCGIM SSDDSNGVVI EGPEFVGMPP ARQLEMVDKL RVMARSRSGD KQVLVERLKQ KGHVVAVTTG
701: EGTSDARALG AADVVLYMRA PGARVAGSVR DIIILKGRFD AVVAAIRMGR CVYNNFQKMV QFYLTVNVVA IVVNFVPAVT TGDTPLTTEQ LLWVNIVIGA
801: LSALAVATDK PSDALMDSPP VARTAPLVSN AMWRDLAAQA AFQVAVLLAL QYRGRDVLGT DAKAMVFNVY VLCQVFNKFN TREMEKKNAF AGVLTSSSTM
901: FLVFIAGMLV LQVVMVEVLG RLAGAERLGL GQWGICVAMA AVSWPVAMAA KFIPVTSPCR SSSHANALC

Best Arabidopsis Sequence Match ( AT3G22910.1 )
(BLAST)

0001: MRRNVSDHAE KKDKVGVEVL LELPKTLSKS NKKWQLALIK LYCSRTLLNC AKHAIRKPGL FPRSLSYTAI DLDHHHGDDH FKIDTETLND LVKNKNQEKL
0101: ESLGGPNGLV SALKSNTRLG INEEGDEIQR RRSTFGSNTY TRQPSKGLFH FVVEAFKDLT ILILLGCATL SLGFGIKEHG LKEGWYDGGS IFVAVFLVVA
0201: VSAVSNFRQN RQFDKLSKVS SNIKIDVVRN GRRQEISIFD IVVGDIVCLN IGDQVPADGV FVEGHLLHVD ESSMTGESDH VEVSLTGNTF LFSGTKIADG
0301: FGKMAVTSVG MNTAWGQMMS HISRDTNEQT PLQSRLDKLT SSIGKVGLLV AFLVLLVLLI RYFTGTTKDE SGNREYNGKT TKSDEIVNAV VKMVAAAVTI
0401: IVVAIPEGLP LAVTLTLAYS MKRMMKDNAM VRKLSACETM GSATVICTDK TGTLTLNQMK VTDFWFGLES GKASSVSQRV VELFHQGVAM NTTGSVFKAK
0501: AGTEYEFSGS PTEKAILSWA VEELEMGMEK VIEEHDVVHV EGFNSEKKRS GVLMKKKGVN TENNVVHWKG AAEKILAMCS TFCDGSGVVR EMKEDDKIQF
0601: EKIIQSMAAK SLRCIAFAYS EDNEDNKKLK EEKLSLLGII GIKDPCRPGV KKAVEDCQFA GVNIKMITGD NIFTARAIAV ECGILTPEDE MNSEAVLEGE
0701: KFRNYTQEER LEKVERIKVM ARSSPFDKLL MVKCLKELGH VVAVTGDGTN DAPALKEADI GLSMGIQGTE VAKESSDIVI LDDNFASVAT VLKWGRCVYN
0801: NIQKFIQFQL TVNVAALVIN FVAAVSAGDV PLTAVQLLWV NLIMDTLGAL ALATEKPTND LMKKKPIGRV APLITNIMWR NLLAQAFYQI SVLLVLQFRG
0901: RSIFNVTEKV KNTLIFNTFV LCQVFNEFNA RSLEKKNVFK GLHKNRLFIG IIVVTVVLQV VMVEFLKRFA DTERLNLGQW GVCIAIAAAS WPIGWLVKSV
1001: PVPERHFFSY LKWKKRS

Arabidopsis Description

ACA13Putative calcium-transporting ATPase 13, plasma membrane-type [Source:UniProtKB/Swiss-Prot;Acc:Q9LIK7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.