CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77491
CDX85120
CDY18100
CDY56229
CDY70999
CDY71066

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23670.1	CDX77491	AT3G23670.1	15258761
AT3G23670.1	CDX85120	AT3G23670.1	15258761
AT3G23670.1	CDY18100	AT3G23670.1	15258761
AT3G23670.1	CDY56229	AT3G23670.1	15258761
AT3G23670.1	CDY70999	AT3G23670.1	15258761
AT3G23670.1	CDY71066	AT3G23670.1	15258761

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71066	Canola	cytosol, mitochondrion	95.82	96.08
Bra014969.1-P	Field mustard	cytosol, plastid	99.33	55.33
CDY18100	Canola	cytosol, plastid	85.98	48.81
CDY56229	Canola	cytosol, plastid	86.12	48.59
AT3G23670.1	Thale cress	cytosol	82.21	46.46
Os04t0350300-00	Rice	cytosol, plastid	30.73	32.52
VIT_05s0029g00400.t01	Wine grape	cytosol, plastid	57.55	31.87
PGSC0003DMT400042877	Potato	nucleus	35.18	31.18
KRH31548	Soybean	cytosol, plastid	48.11	28.65
KRG97368	Soybean	cytosol, plastid	47.44	28.27
Solyc12g098630.1.1	Tomato	cytosol, plastid	49.46	27.97
PGSC0003DMT400011905	Potato	cytosol, plastid	49.06	27.85
Os02t0489800-00	Rice	cytosol	22.1	27.42
GSMUA_Achr9P01650_001	Banana	cytosol	41.37	27.34
Solyc09g097860.2.1	Tomato	cytosol	49.46	26.85
KRH58812	Soybean	plastid	42.18	26.75
KRH42707	Soybean	plastid	42.32	26.5
GSMUA_Achr9P07340_001	Banana	cytosol, plastid	39.76	25.32
Zm00001d025149_P001	Maize	cytosol, plastid	36.52	23.79
KXG25952	Sorghum	cytosol, plastid	36.39	23.77
TraesCS2A01G275700.2	Wheat	cytosol, plastid	35.58	23.24
TraesCS2B01G293400.1	Wheat	cytosol, plastid	35.58	23.24
TraesCS2D01G274700.1	Wheat	plastid	35.58	23.24
HORVU2Hr1G067290.2	Barley	cytosol, plastid	35.58	23.0
TraesCS6A01G389400.1	Wheat	cytosol	13.07	17.11
CDY36055	Canola	plastid	21.97	15.36
HORVU6Hr1G090690.2	Barley	cytosol, plastid	12.67	14.76
CDX82261	Canola	plastid	22.64	13.76
CDX85120	Canola	cytosol, plastid	7.55	13.56
CDX68941	Canola	cytosol	6.6	10.25
CDX85308	Canola	cytosol	12.8	9.23
CDY19973	Canola	cytosol	12.8	9.18
CDY63235	Canola	cytosol	12.8	9.14
CDY45912	Canola	cytosol	12.67	9.14
CDY35769	Canola	cytosol	12.67	9.09
CDX86343	Canola	cytosol	12.53	9.04
CDY55295	Canola	cytosol	14.96	8.75
CDX87944	Canola	cytosol	14.82	8.7
CDY47900	Canola	cytosol	8.09	8.68
CDY30599	Canola	cytosol	11.99	8.67
CDY17754	Canola	cytosol	11.99	8.65
CDX75326	Canola	cytosol	4.04	8.24
CDX75327	Canola	nucleus	2.96	8.15
CDY08463	Canola	cytosol, plastid	10.65	8.13
CDY67820	Canola	cytosol	9.03	8.11
CDY27279	Canola	cytosol	8.89	8.09
CDY01095	Canola	cytosol, plastid	10.51	8.02
CDY67829	Canola	cytosol	8.89	7.99
CDY14073	Canola	plastid	10.24	7.78
CDY04998	Canola	plastid	10.11	7.69
CDY58692	Canola	nucleus	13.07	7.57
CDY02183	Canola	nucleus	13.07	7.51
CDY42843	Canola	cytosol	12.8	7.49
CDY47004	Canola	cytosol	12.67	7.45
CDY45884	Canola	cytosol, plastid	6.47	7.31
CDY04671	Canola	plastid	8.76	7.24
CDY08179	Canola	plastid	8.76	7.24
CDY15900	Canola	nucleus	8.09	7.11
CDY22404	Canola	nucleus	7.28	7.03
CDY41952	Canola	nucleus	7.68	7.01
CDX82022	Canola	plastid	10.11	7.0
CDX84151	Canola	cytosol	9.57	6.99
CDY31717	Canola	cytosol, plastid	9.84	6.97
CDX82016	Canola	nucleus	8.09	6.96
CDY13822	Canola	nucleus	8.09	6.96
CDX75064	Canola	cytosol	9.43	6.94
CDY42594	Canola	nucleus	7.68	6.93
CDX77192	Canola	cytosol, plastid	9.7	6.88
CDX72718	Canola	plastid	9.43	6.88
CDX82979	Canola	cytosol, plastid	9.84	6.87
CDY23691	Canola	cytosol, plastid	9.84	6.87
CDX99601	Canola	nucleus	7.55	6.85
CDY12957	Canola	cytosol	7.55	6.78
CDY22394	Canola	plastid	9.43	6.75
CDX74009	Canola	cytosol	11.32	6.7
CDX90305	Canola	plastid	9.3	6.68
CDY12116	Canola	plastid	9.3	6.68
CDX73746	Canola	cytosol	8.63	6.61
CDY44836	Canola	cytosol	8.09	6.6
CDY30956	Canola	cytosol, plastid	8.09	6.59
CDY21709	Canola	plastid	8.36	6.53
CDX81870	Canola	plastid	8.36	6.51
CDY30779	Canola	cytosol	8.63	6.47
CDY07951	Canola	cytosol	11.19	6.46
CDY34261	Canola	cytosol	7.28	6.38
CDY19208	Canola	cytosol	8.36	6.37
CDY26167	Canola	cytosol, plastid	8.36	6.33
CDY45220	Canola	cytosol	8.63	6.31
CDX77978	Canola	cytosol	8.36	6.28
CDY18447	Canola	cytosol, plastid	9.43	6.23
CDY29004	Canola	cytosol	8.49	6.23
CDX93381	Canola	cytosol, plastid	9.16	6.18
CDX90660	Canola	cytosol	8.36	6.05
CDY03482	Canola	cytosol	7.68	5.97
CDX95855	Canola	cytosol	15.23	5.58
CDY43743	Canola	nucleus	7.01	5.49
CDX99277	Canola	cytosol	19.27	5.29
CDX92299	Canola	cytosol	19.41	5.28
CDX72728	Canola	cytosol	5.12	5.16
CDX92129	Canola	cytosol	10.65	4.13
CDY02395	Canola	nucleus	2.16	2.38
CDY03483	Canola	cytosol	0.54	2.26
GSMUA_Achr7P17300_001	Banana	cytosol	0.54	2.13
CDX77491	Canola	cytosol, plastid	0.94	1.92

Protein Annotations

Gene3D:1.20.58.1980	MapMan:20.1.3.10	GO:A0A078JW57	UniProt:A0A078JW57	EnsemblPlants:CDY70999	ProteinID:CDY70999
ProteinID:CDY70999.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003774	GO:GO:0003777
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0007018	GO:GO:0008017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00010535001	InterPro:IPR001752	InterPro:Kinesin-like_fam
InterPro:Kinesin_motor_dom	InterPro:P-loop_NTPase	PFAM:PF00225	PFscan:PS50067	PANTHER:PTHR24115	PANTHER:PTHR24115:SF413
SMART:SM00129	SUPFAM:SSF52540	UniParc:UPI0004EECBB8	SEG:seg	:	:

Description

BnaA07g36420DBnaA07g36420D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JW57]

Coordinates

chrLK044080:+:170..2911

Molecular Weight (calculated)

82589.5 Da

IEP (calculated)

4.736

GRAVY (calculated)

-0.621

Length

742 amino acids

Sequence
(BLAST)

001: MLTIRVFTCR NLINILAEIS QTGKQRHIPY RDSRLTFLLQ ESLGGNAKLA MVCAVSPSQS CRSETFSTLR FAQRAKAIQN KAVVNEVMQD DVNFLREVIR
101: QLREELQRVK NNGNNPTNPN AAYTTSWNSR RSMSLLRSFG LSHPKFLAHG DDDGDTEMEI DEEAVERLCA QIGLQSSPPA EENNQEMGRD EDFNNSHLKS
201: SDGQSTGNQF PEDADVNMED VSCQTENFGA VTTDSASTVA ETGIPTAVQT LDHGSSVQTR LITNSPGSCI SDTNNENSPS KAENVLSCQD LVPGALVSGI
301: ASVADATDDT NHFSENPGSP CLSIDPVNGS PLLITPTESV SPKVRNSRKS LRTSSMSTAS QKDIERANQV TTETVGPSSA MSTHKSGAFP VPTNQLAASL
401: HRGMRILDSY RQSTAQRRST FGFSYRALEC KPSTVLSKAD VGVQTYPEAN IIAEENSKEV LCSKCKCIAE CDAHETSDLS NLQLVPADNS EVSEKSIFQV
501: PKAVEKVLAG SIRREMALEE FCTKQASEIS QLNRLVQQYK HERECNAIIG QTREDKIVRL ESLMDGVLSK DDFLDEEFAS LMHEHKLLKD MYENHPEVLE
601: TRIELKRAQD EVESFKNFYG EMGEREVLLE EIHDLKAQLQ CYTDSSLTSS RKRGSLLKLT HTCDPNQAPQ LNAIPESMEE SSEKTLSEQE RLRWNEAESN
701: WISLAEELRT ELDANRKLME KQKRELDTEK RCAEELTEAM QM

Best Arabidopsis Sequence Match ( AT3G23670.1 )
(BLAST)

0001: MKHFMMPRNA ILRDIGESQS PNPSLTKSKS QRKIKSSKEN APPPDLNSLI PDHRSSPAKL KSPLPPRPPS SNPLKRKLIA EATADNGVAI GVSDSGVKVI
0101: VRMKPPSKGE EEEMIVKKIS NDALTINEQT FTFDSIADPE STQDEIFQLV GAPLVENCLA GFNSSVFAYG QTGSGKTYTM WGPANGLLEE HLSGDQRGLT
0201: PRVFELLFAR LSEEQAKHAE RQLKYQCRCS FLEIYNEQIT DLLDPSLKNL MIREDVKSGV YVENLTEEYV KNLKDLSKLL VKGLANRRTG ATSVNAESSR
0301: SHCVFTCVVE SHCKSVADGL SSFKTSRINL VDLAGSERQK LTGAAGDRLK EAGNINRSLS QLGNLINILA EISQTGKQRH IPYRDSRLTF LLQESLGGNA
0401: KLAMVCAVSP SQSCRSETFS TLRFAQRAKA IQNKAIVNEV MQDDVNFLRE VIRQLRDELQ RVKDDKGNNP TNPNAAYTTS WNARRSLSLL RSFGLGHPKS
0501: LPNGDDDGDT EMEIDEEAVE RLCAQMGLSP PAEDNNQEMS RVEKINSSLQ TVVLKDESYN NSHLKSSEAT DVNMEDACCQ TENNGSETDN ALTVAETMDD
0601: GSSVQPDSIT NSLHSCISDT NQGNSPSKAE NIPSCQDLVI EADVSAIVSV ADTSNNTEQV SVNPVSPCLS VAPVSVSPVL IPPTESASPK IRNSRKSLRT
0701: TSMSTASQKD IERANQLTPE VVEPSPAMST EVLNLYSALS TKKSEAFPVP TRQLAASLHR GMKLLDSYRQ STALRRSTFR LSYKALECKP STVLSKADVG
0801: VQTYPQADEI AEDNSKEVLC SRCKCRAECD AQEISDTSNL QLVPIDNSEG SEKSNFQVPK AVEKVLAGSI RREMAMEEFC TKQASEISQL NRLVQQYKHE
0901: RECNAIIGQT REDKIVRLES LMDGVLSKDD FLDEEFASLM HEHKLLKDMY ENHPEVLQTR IELKRVQEEL ESFKNFYGDM GEREVLLEEI HDLKAQLQCY
1001: TDSSLTSARR RGSLLKLTYA CDPNQAPQLN TIPESVDEGP EKTLEQERLR WTEAESNWIS LAEELRTELD TNRLLMEKQK RELDTEKRCA EELTEAMQMA
1101: MQGHARMIEQ YADLEEKHIQ LLARHRRIRE GIDDVKKAAA RAGVKGAESR FINALAAEIS ALKVQREKEV RYFRDENKSL QSQLRDTAEA VQAAGELLVR
1201: FKEAEEGLTF AQKRAMDAEY EASEAYKKVD KLKRKYETEI STVNQQHNAE PQNPIESLQA SCNDDAMAKY DEPSASDGDN QWREEFQPFY KKDEELSKLA
1301: EPSWFSGYDR CNI

Arabidopsis Description

KIN12BKinesin-like protein KIN-12B [Source:UniProtKB/Swiss-Prot;Acc:Q8L7Y8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.