CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80182	Sorghum	mitochondrion	84.33	87.23
KXG24790	Sorghum	cytosol, mitochondrion	89.11	84.62
TraesCSU01G191900.1	Wheat	extracellular, vacuole	16.6	80.13
TraesCS7D01G233100.2	Wheat	mitochondrion	77.16	77.36
TraesCS7B01G131400.1	Wheat	mitochondrion	77.16	77.36
TraesCS7A01G232900.1	Wheat	mitochondrion	76.89	77.1
TraesCS7D01G173600.1	Wheat	cytosol	54.58	76.54
TraesCS7A01G001700.1	Wheat	mitochondrion	69.32	75.65
TraesCS4A01G499100.1	Wheat	cytosol	39.44	74.44
TraesCS4A01G498200.2	Wheat	cytosol	73.97	74.17
TraesCS4A01G496400.1	Wheat	mitochondrion	73.04	72.75
HORVU7Hr1G047800.10	Barley	mitochondrion	66.27	71.8
Os06t0483200-02	Rice	cytosol, mitochondrion, peroxisome, plastid	18.19	70.98
EER90340	Sorghum	cytosol	68.79	70.57
EES14558	Sorghum	cytosol	70.65	70.18
HORVU7Hr1G047790.3	Barley	cytosol, extracellular	7.17	69.23
TraesCS7D01G173700.1	Wheat	cytosol, mitochondrion	20.58	68.89
KXG28793	Sorghum	mitochondrion	68.53	67.36
KXG29446	Sorghum	endoplasmic reticulum, extracellular	55.91	65.47
HORVU0Hr1G025390.3	Barley	endoplasmic reticulum	67.2	65.21
TraesCS7D01G001800.3	Wheat	mitochondrion	37.32	64.9
OQU77014	Sorghum	cytosol	56.31	63.95
OQU91432	Sorghum	cytosol	65.34	61.96
KXG35171	Sorghum	extracellular	50.2	59.9
EES17376	Sorghum	mitochondrion	60.29	59.89
EES04501	Sorghum	cytosol	58.43	59.54
KXG23805	Sorghum	cytosol	58.57	58.26
EES06259	Sorghum	cytosol	57.1	56.8
EES06258	Sorghum	cytosol	56.31	55.72
OQU83221	Sorghum	cytosol	55.91	54.96
KXG28324	Sorghum	cytosol	19.52	53.45
EES08419	Sorghum	cytosol, mitochondrion, plastid	13.81	52.26
KXG29303	Sorghum	cytosol	5.58	51.22
EES13537	Sorghum	cytosol	50.2	49.61
VIT_10s0003g03550.t01	Wine grape	extracellular	4.78	36.0

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	UniProt:A0A1Z5R9T6	GO:GO:0003674	GO:GO:0003824	GO:GO:0016853
GO:GO:0016866	EnsemblPlants:OQU80191	ProteinID:OQU80191	ProteinID:OQU80191.1	PFAM:PF13243	PFAM:PF13249
ScanProsite:PS01074	PANTHER:PTHR11764	PANTHER:PTHR11764:SF23	EnsemblPlantsGene:SORBI_3007G090472	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N
SUPFAM:SSF48239	InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI00081ADC2B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:14128551..14165426

Molecular Weight (calculated)

86263.1 Da

IEP (calculated)

6.371

GRAVY (calculated)

-0.259

Length

753 amino acids

Sequence
(BLAST)

001: MWRLKVAEGA GPWLKSSNNF RGRAVWEFDP ELGTPEERAE VERARREFTE RRFQKRESSD LLLRLQYAKH KHLQVDPPPA KLAENEEVTE DIILAALRRA
101: LAQHSSLQAD DGCWPADYSG LLFIMPLLVF ALYTTGSLNT VLSKEHQREI RRYIYNHQNE DGGWGKQVLG PSTMFGSCLN YVALRLIGED CTNVALTNGR
201: EWILSHGSAT AIPQWGKIWF SVMGLYDWSG NNPVIPELWL LPYFLPIHPG RFWILCRMVY LPMAYLFGKK FVGEVTPTIL ELRSELYSVP YSEVDWKKAR
301: DTCAKVDLIY PRTMAQNLVW TFLNKVIEPM LNWWPVNKLR DIALQNIMEH IHYEDETSKY ICICPINKAL DMICCWAENP NSDAFKQHLP RIYDMLWLAE
401: DGMKAQVYDG CTTWETAFIV QAFCSTGLVN EISSTLRKAH EFIKCSQISE NHLDYKSYYR HASKGSWTLS TADNGCSISD CTAEALKALL LLSKISPDLV
501: GEPIKGESLY DAVDCLLSFV NNDGSFSAYE CKRTTPLLEV LNPSESFRNI IVDYPCVECT SSVLQALIMF RDLDHVYRKE EIGNCIERAS RFIEKEQRKD
601: GSWFGSWGIC FTYGTFFAIK GLALSGRTYE NSDAIRKACS FLLSKQLHTG GWGETYLSSE TAEYVEASRP HAVNTAWAML TLVYGGQVER DPTPLYKAAK
701: ELINMQLDSG DFPQQEHVGC FNSSIFFNYG NYRNLYPIWA LGEFRRRLLE RKK

Best Arabidopsis Sequence Match ( AT2G07050.1 )
(BLAST)

001: MWKLKIAEGG SPWLRTTNNH VGRQFWEFDP NLGTPEDLAA VEEARKSFSD NRFVQKHSAD LLMRLQFSRE NLISPVLPQV KIEDTDDVTE EMVETTLKRG
101: LDFYSTIQAH DGHWPGDYGG PMFLLPGLII TLSITGALNT VLSEQHKQEM RRYLYNHQNE DGGWGLHIEG PSTMFGSVLN YVTLRLLGEG PNDGDGDMEK
201: GRDWILNHGG ATNITSWGKM WLSVLGAFEW SGNNPLPPEI WLLPYFLPIH PGRMWCHCRM VYLPMSYLYG KRFVGPITST VLSLRKELFT VPYHEVNWNE
301: ARNLCAKEDL YYPHPLVQDI LWASLHKIVE PVLMRWPGAN LREKAIRTAI EHIHYEDENT RYICIGPVNK VLNMLCCWVE DPNSEAFKLH LPRIHDFLWL
401: AEDGMKMQGY NGSQLWDTGF AIQAILATNL VEEYGPVLEK AHSFVKNSQV LEDCPGDLNY WYRHISKGAW PFSTADHGWP ISDCTAEGLK AALLLSKVPK
501: AIVGEPIDAK RLYEAVNVII SLQNADGGLA TYELTRSYPW LELINPAETF GDIVIDYPYV ECTSAAIQAL ISFRKLYPGH RKKEVDECIE KAVKFIESIQ
601: AADGSWYGSW AVCFTYGTWF GVKGLVAVGK TLKNSPHVAK ACEFLLSKQQ PSGGWGESYL SCQDKVYSNL DGNRSHVVNT AWAMLALIGA GQAEVDRKPL
701: HRAARYLINA QMENGDFPQQ EIMGVFNRNC MITYAAYRNI FPIWALGEYR CQVLLQQGE

Arabidopsis Description

CAS1Cycloartenol synthase [Source:UniProtKB/Swiss-Prot;Acc:P38605]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.