CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G020020.1	Barley	mitochondrion	53.99	78.7
KXG29446	Sorghum	endoplasmic reticulum, extracellular	68.06	78.23
TraesCS6B01G139500.1	Wheat	mitochondrion	73.48	70.7
TraesCS6D01G100000.1	Wheat	mitochondrion	73.07	70.31
TraesCS6A01G111400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	72.8	69.6
Os11t0562100-01	Rice	plasma membrane	70.64	68.5
Os02t0140400-01	Rice	cytosol	37.89	65.27
Os02t0140200-01	Rice	mitochondrion, plasma membrane, vacuole	42.49	63.43
HORVU0Hr1G022520.1	Barley	mitochondrion	27.88	61.68
OQU80182	Sorghum	mitochondrion	60.22	61.13
Os02t0140500-00	Rice	mitochondrion	7.31	60.67
EER90340	Sorghum	cytosol	59.27	59.67
OQU80191	Sorghum	cytosol, mitochondrion	59.54	58.43
EES08419	Sorghum	cytosol, mitochondrion, plastid	15.43	57.29
KXG28793	Sorghum	mitochondrion	58.73	56.66
KXG24790	Sorghum	cytosol, mitochondrion	60.22	56.12
OQU77014	Sorghum	cytosol	50.34	56.11
EES14558	Sorghum	cytosol	56.97	55.54
EES17376	Sorghum	mitochondrion	55.89	54.49
KXG23805	Sorghum	cytosol	55.21	53.9
KXG35171	Sorghum	extracellular	46.01	53.88
OQU91432	Sorghum	cytosol	57.65	53.65
EES06259	Sorghum	cytosol	53.32	52.05
EES06258	Sorghum	cytosol	52.64	51.12
TraesCS6D01G099900.1	Wheat	cytosol	14.21	50.97
OQU83221	Sorghum	cytosol	51.29	49.48
EES13537	Sorghum	cytosol	46.96	45.54
HORVU6Hr1G019760.1	Barley	mitochondrion	4.47	44.59
HORVU6Hr1G019940.2	Barley	nucleus	23.14	43.62
VIT_10s0003g03550.t01	Wine grape	extracellular	5.14	38.0
KXG28324	Sorghum	cytosol	13.94	37.45
KXG29303	Sorghum	cytosol	1.49	13.41
TraesCS4A01G498900.1	Wheat	cytosol	1.49	11.96

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	UniProt:C5XUK6	EnsemblPlants:EES04501	ProteinID:EES04501	ProteinID:EES04501.2
GO:GO:0003674	GO:GO:0003824	GO:GO:0016853	GO:GO:0016866	PFAM:PF13243	PFAM:PF13249
ScanProsite:PS01074	PANTHER:PTHR11764	PANTHER:PTHR11764:SF23	EnsemblPlantsGene:SORBI_3004G038300	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N
SUPFAM:SSF48239	InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	TMHMM:TMhelix	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase
UniParc:UPI0007F2D9C4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:3151419..3161122

Molecular Weight (calculated)

84748.9 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.347

Length

739 amino acids

Sequence
(BLAST)

001: MWRLKVAQGD DGPWLRSTNN FVGRAVWEFD PDHGTPEERA DVERLRREFS QHRFQRRESS DLLMRMQGTK QNRCQRDLPR IKLEEDDQVT EEIVLSSLRR
101: ALDQFSSLQA SDGHWPGDFS GIMFIMPGLI FALYVTGSLN AVISPEHRHE ICRYIYNHQN EDGGWSTLVL GSSTMFGTCS NYITLRLLGE ELYGNNDALA
201: KGRAWILSHG GATFIPQWGK IWLSVLGVFD WSGNNPIFPE LWLIPQFLPF HPGKFWCLTR MVYLPMAYLY GKKFVGPITP TILALREEIY DTPYNKIDWS
301: NARNECAKED LICPRTLLQN VVWTSLYRCV EPVLSSWPVN KLRERALGNL MEHIHYEDEN TQYLCICSVN KALNMICCWV EDPNSDAFKH HLARVPDFLW
401: LSEDGMKAQV YDGCQSWETS FIIQAFCGTD LVNEYGPTIQ RAYEFMKNSQ VLRNHPGDQS KWHRHRSKGS WTLSSADNGW AVSDTTGEAL KAVLLVAKIS
501: NKNNLAGDPI EKQRLHDAME IRNAILCNKD GTFSTYECKR SSSWIEILNP CESFPNMVVD YPYPECTSSV LQALILFQEL YPGYRTKEIK TSIRNAATFI
601: ERSQQEDGSW LGTWGVCFTY GAFFSIKGLV DYGRTYENNS FIRKGCHFLL SKQLTTGGWG ESHVSNETQN IQFINLLAYT FLIQDGARSN TITPCCKRID
701: KYAVGDRRVP TARACRMLQL FSFLQLPQLP QLVPHLGSR

Best Arabidopsis Sequence Match ( AT1G78950.1 )
(BLAST)

001: MWRLKIGEGN GDDPYLFTTN NFAGRQTWEF DPDGGSPEER HSVVEARRIF YDNRFHVKAS SDLLWRMQFL REKKFEQRIA PVKVEDSEKV TFETATSALR
101: RGIHFFSALQ ASDGHWPAEN AGPLFFLPPL VFCLYITGHL DEVFTSEHRK EILRYIYCHQ KEDGGWGLHI EGHSTMFCTT LNYICMRILG ESPDGGHDNA
201: CGRAREWILS HGGVTYIPSW GKTWLSILGV FDWSGSNPMP PEFWILPSFF PVHPAKMWSY CRMVYLPMSY LYGKRFVGPI TSLILQLRKE LYLQPYEEIN
301: WMKVRHLCAK EDTYYPRPLV QELVWDSLYI FAEPFLARWP FNKLLREKAL QLAMKHIHYE DENSRYITIG CVEKVLCMLA CWVEDPNGDY FKKHLSRISD
401: YLWMAEDGMK MQSFGSQLWD TGFAMQALLA SNLSSEISDV LRRGHEFIKN SQVGENPSGD YKSMYRHISK GAWTFSDRDH GWQVSDCTAH GLKCCLLFSM
501: LAPDIVGPKQ DPERLHDSVN ILLSLQSKNG GMTAWEPAGA PKWLELLNPT EMFSDIVIEH EYSECTSSAI QALSLFKQLY PDHRTTEITA FIKKAAEYLE
601: NMQTRDGSWY GNWGICFTYG TWFALAGLAA AGKTFNDCEA IRKGVQFLLA AQKDNGGWGE SYLSCSKKIY IAQVGEISNV VQTAWALMGL IHSGQAERDP
701: IPLHRAAKLI INSQLESGDF PQQQATGVFL KNCTLHYAAY RNIHPLWALA EYRARVSLP

Arabidopsis Description

Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.