Factsheet for VIT_00s0268g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04600.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0115g00220.t01	Wine grape	cytosol	41.12	68.54
VIT_04s0079g00370.t01	Wine grape	cytosol	49.44	53.53
Os03t0860700-00	Rice	cytosol, plasma membrane	65.17	32.62
VIT_05s0051g00050.t01	Wine grape	cytosol	88.54	26.48
Os02t0816900-01	Rice	cytosol, plasma membrane	74.61	26.16
VIT_07s0005g02970.t01	Wine grape	cytosol	62.25	24.23
VIT_07s0005g04790.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.08	22.6
OQU85951	Sorghum	cytosol	74.38	21.76
Zm00001d018481_P033	Maize	cytosol	74.61	21.71
TraesCS6A01G390800.2	Wheat	cytosol	72.58	21.39
TraesCS6D01G377100.1	Wheat	cytosol	72.58	21.39
HORVU6Hr1G091010.24	Barley	cytosol	72.58	21.38
GSMUA_AchrUn_...	Banana	cytosol	73.93	21.36
TraesCS6B01G431400.1	Wheat	cytosol	72.36	21.32
KXG34975	Sorghum	cytosol	67.87	20.94
VIT_14s0081g00160.t01	Wine grape	cytosol	68.09	19.89
GSMUA_Achr3P27420_001	Banana	cytosol	74.61	19.89
VIT_11s0016g01710.t01	Wine grape	cytosol	67.87	19.88
EER90459	Sorghum	cytosol	66.29	19.88
KRG89126	Soybean	cytosol	70.11	19.73
Zm00001d019495_P001	Maize	cytosol	66.52	19.65
Solyc09g091080.2.1	Tomato	cytosol	71.69	19.62
HORVU1Hr1G044020.1	Barley	cytosol	66.29	19.55
Zm00001d034927_P001	Maize	cytosol	65.62	19.54
TraesCS4A01G313500.1	Wheat	cytosol	64.94	19.44
TraesCS5B01G566200.1	Wheat	cytosol	64.94	19.44
TraesCS1D01G174000.2	Wheat	cytosol	65.84	19.42
TraesCS1A01G166900.2	Wheat	cytosol	65.84	19.4
VIT_09s0002g01910.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	67.87	19.38
HORVU5Hr1G125430.15	Barley	cytosol	64.04	19.36
TraesCS1B01G183200.1	Wheat	cytosol	65.39	19.27
CDX79520	Canola	endoplasmic reticulum	65.39	19.25
TraesCS5D01G558600.1	Wheat	cytosol	64.04	19.15
KRH40872	Soybean	cytosol	70.56	18.81
VIT_13s0320g00070.t01	Wine grape	cytosol	64.49	18.44
AT1G04600.1	Thale cress	cytosol	71.24	18.32
CDX86626	Canola	cytosol	69.89	17.79
CDY15512	Canola	cytosol	69.89	17.72
CDY19473	Canola	cytosol	68.76	17.48
AT2G33240.1	Thale cress	cytosol	69.44	17.46
GSMUA_Achr1P03340_001	Banana	cytosol	71.91	17.22
CDX84695	Canola	cytosol	66.52	17.07
CDY17154	Canola	cytosol	68.31	16.63
VIT_04s0008g01990.t01	Wine grape	cytosol	55.06	16.08
Bra030576.1-P	Field mustard	cytosol	60.9	16.03
VIT_10s0071g00210.t01	Wine grape	plastid	35.06	13.22
VIT_19s0014g03640.t01	Wine grape	cytosol	32.58	12.11
VIT_14s0030g02000.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.120.720	Gene3D:1.20.5.190	Gene3D:1.20.58.530	Gene3D:3.30.70.3240	Gene3D:3.40.850.10	MapMan:35.1
ProteinID:CCB60918	ProteinID:CCB60918.1	UniProt:F6I1V1	EMBL:FN596516	GO:GO:0000166	GO:GO:0003674
GO:GO:0003774	GO:GO:0003777	GO:GO:0003779	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0007018
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016459	GO:GO:0016787	InterPro:IPR000048
InterPro:IPR001609	InterPro:IPR036961	InterPro:IQ_motif_EF-hand-BS	InterPro:Kinesin_motor_dom_sf	InterPro:Myosin_head_motor_dom	InterPro:P-loop_NTPase
PFAM:PF00063	PFAM:PF00612	PRINTS:PR00193	PFscan:PS50096	PFscan:PS51456	PANTHER:PTHR13140
PANTHER:PTHR13140:SF382	SMART:SM00015	SMART:SM00242	SUPFAM:SSF52540	UniParc:UPI0002108622	ArrayExpress:VIT_00s0268g00030
EnsemblPlantsGene:VIT_00s0268g00030	EnsemblPlants:VIT_00s0268g00030.t01	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:19629747..19631204

Molecular Weight (calculated)

51207.5 Da

IEP (calculated)

9.045

GRAVY (calculated)

-0.350

Length

445 amino acids

Sequence
(BLAST)

001: ALAKIVYSRL FDWTVDKINN FIGQDPDSKV LIEVLDIYGF ESFKTSSFEQ FCINLAKEKL QQHFNQHVFK MEQEEYTKEE IDWSYIDYVD NQDILDLIEK
101: KPGGIIALLD ETCIFFPRST HETFSQKLYQ TFKSHKRFSK PKLSPTDFTI YHYAGDVTYQ TEHFLDKNKD YVVAEHQSLL SASRYSLVAD LFPPLPGESS
201: KTLKFSSIGS RFKQQLQSLL ETLSATEPHY VRCVKPNNPF KPSIFENNNV LQQLRYGGAL KVIRISCAGY PTRRMFVEFI ARFGILAPNV LEGSCDEVTA
301: SKRILEEVDL KGDQIGKAKV FLIAGQTTEL DARRNEVLGR SVSIIQRKVR SYLTLACRTI QKDLRTYLAR KAYNRLCSSA ISIQTGMRVM GACNELHFRK
401: QTKATIIIQS PCRGYLAHLH YLRRQFPYNV PGEEKLPVEN YGSLK

Best Arabidopsis Sequence Match ( AT1G04160.1 )
(BLAST)

0001: MVATFNPAVG SHVWVEDPDE AWLDGEVVEI NGDQIKVLCA SGKQVVVKDS NIYPKDVEAP ASGVEDMTRL AYLHEPGVLQ NLQSRYDINE IYTYTGSILI
0101: AVNPFRRLPH LYSSHMMTQY KGASLGELSP HPFAVADAAY RQMVNEGVSQ SILVSGESGA GKTESTKLLM RYLAFMGGRG AATEGRTVEQ KVLESNPVLE
0201: AFGNAKTVKN NNSSRFGKFV EIQFDQSGRI SGAAIRTYLL ERSRVCQVSD PERNYHCFYM LCAAPEEDAK KFKLGDPKIY HYLNQSKCIQ LDAMNDAEEY
0301: HATKKAMDVV GISSEEQDAI FRVVASILHL GNIEFAKGTE IDSSIPRDEK SWFHLKTAAE LLMCNEKSLE DSLCKRIMAT RDETITKTLD PEAALLSRDA
0401: LAKVMYSRLF DWLVEKINTS IGQDPDSKYL IGVLDIYGFE SFKTNSFEQF CINLTNEKLQ QHFNQHVFKM EQEEYKKEEI NWSYIEFVDN QDILDLIEKK
0501: PGGIIALLDE ACMFPRSTHE TFAQKLYQTY KNHKRFTKPK LARSDFTICH YAGDVTYQTE LFLDKNKDYV IAEHQALLNA STCSFVANLF PPVSDDSKQS
0601: KFSSIGTRFK QQLVSLLEIL NTTEPHYIRC IKPNNLLKPG IFENQNVLQQ LRCGGVMEAI RISCAGYPTR KHFDEFLNRF GIIAPQVLDK NSNEPAACKK
0701: LLDKAGLEGY QIGKSKVFLR AGQMADLDTR RTEILGRSAS IIQRKVRSYL AQKTFIQLRI SATQIQAVCR GYLARSIYEG MRREAAALKI QRDLRKFLAR
0801: KAYTELFSAT ILIQAGMRGM VSRKELCLRR QTKAATIIQT RCRVYLARLH YRKLKKAAIT TQCAWRGKVA RKELKNLKMA ARETGALQEA KNKLEKQVEE
0901: LTWRLQLEKR MRTDLEEAKK QENAKYESSL EEIQNKFKET EALLIKEREA AKTVSEVLPI IKEVPVVDQE LMEKLTNENE KLKGMVSSLE IKIDETAKEL
1001: HETARISQDR LKQALAAESK VAKLKTAMQR LEEKISDMET EKQIMLQQTI LNTPVKSVAG HPPTATIKNL ENGHRTNLEN QFNEVEVNGN AGKSAAERQL
1101: ENVDTLIDCV KENIGFSNGK PIAAFTIYKC LLHWKCFESE KTSAFDRLIE MIGSAIENED DNGHLAYWLT NTSALLFLLQ KSLKPAGAGA TASKKPPITT
1201: SLFGRMALSF RSSPNLAAAA EAAALAVIRP VEAKYPALLF KQQLAAYVEK IFGMIRDNLK KELSALISMC IQAPRISKGG IQRSARSLGK DSPAIHWQSI
1301: IDGLNSLLAI LKDNYVPLVL IQKIHTQTFS FVNVQLFNSL LLRKECCTFS NGEFVKSGLA ELELWCGQVN EYAGPSWDEL KHIRQAVGFL VIHQKYRVSY
1401: DDIVHDLCPI LSVQQLYRIC TLYWDDCYNT RSVSQEVISS MRALMTEESN DADSNSFLLD DNSSIPFSID EISNSMHEKD FASVKPAKEL LENPEFVFLH

Arabidopsis Description

XI-BMyosin-8 [Source:UniProtKB/Swiss-Prot;Acc:F4I460]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.