Factsheet for VIT_04s0079g00370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04600.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0115g00220.t01	Wine grape	cytosol	58.64	90.26
VIT_00s0268g00030.t01	Wine grape	cytosol	53.53	49.44
Os03t0860700-00	Rice	cytosol, plasma membrane	46.96	21.71
VIT_07s0005g02970.t01	Wine grape	cytosol	47.69	17.15
VIT_05s0051g00050.t01	Wine grape	cytosol	61.8	17.07
Os02t0816900-01	Rice	cytosol, plasma membrane	50.61	16.39
VIT_07s0005g04790.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.69	15.35
TraesCS6A01G390800.2	Wheat	cytosol	55.23	15.03
TraesCS6B01G431400.1	Wheat	cytosol	54.99	14.97
TraesCS6D01G377100.1	Wheat	cytosol	54.99	14.97
OQU85951	Sorghum	cytosol	54.99	14.86
Zm00001d018481_P033	Maize	cytosol	55.23	14.85
HORVU6Hr1G091010.24	Barley	cytosol	54.5	14.82
EER90459	Sorghum	cytosol	52.31	14.49
VIT_14s0081g00160.t01	Wine grape	cytosol	53.04	14.31
GSMUA_AchrUn_...	Banana	cytosol	53.53	14.29
KXG34975	Sorghum	cytosol	50.12	14.29
Zm00001d034927_P001	Maize	cytosol	51.82	14.26
VIT_11s0016g01710.t01	Wine grape	cytosol	52.31	14.15
TraesCS5D01G558600.1	Wheat	cytosol	51.09	14.11
Zm00001d019495_P001	Maize	cytosol	51.58	14.08
HORVU5Hr1G125430.15	Barley	cytosol	50.37	14.06
TraesCS5B01G566200.1	Wheat	cytosol	50.85	14.06
TraesCS4A01G313500.1	Wheat	cytosol	50.85	14.06
HORVU1Hr1G044020.1	Barley	cytosol	51.34	13.98
TraesCS1D01G174000.2	Wheat	cytosol	51.34	13.98
TraesCS1B01G183200.1	Wheat	cytosol	51.34	13.97
CDX79520	Canola	endoplasmic reticulum	51.34	13.96
VIT_09s0002g01910.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	52.8	13.93
TraesCS1A01G166900.2	Wheat	cytosol	51.09	13.91
KRG89126	Soybean	cytosol	53.28	13.85
GSMUA_Achr3P27420_001	Banana	cytosol	55.96	13.78
VIT_13s0320g00070.t01	Wine grape	cytosol	51.58	13.62
Solyc09g091080.2.1	Tomato	cytosol	53.77	13.59
KRH40872	Soybean	cytosol	54.5	13.42
VIT_04s0008g01990.t01	Wine grape	cytosol	47.69	12.86
AT1G04600.1	Thale cress	cytosol	53.28	12.66
CDX84695	Canola	cytosol	52.31	12.4
CDY15512	Canola	cytosol	52.8	12.36
CDX86626	Canola	cytosol	52.31	12.3
AT2G33240.1	Thale cress	cytosol	52.31	12.15
CDY19473	Canola	cytosol	51.58	12.11
GSMUA_Achr1P03340_001	Banana	cytosol	53.04	11.73
CDY17154	Canola	cytosol	51.34	11.54
Bra030576.1-P	Field mustard	cytosol	45.5	11.06
VIT_10s0071g00210.t01	Wine grape	plastid	31.14	10.85
VIT_19s0014g03640.t01	Wine grape	cytosol	30.9	10.61
VIT_14s0030g02000.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.58.530	MapMan:35.1	ProteinID:CCB51115	ProteinID:CCB51115.1	UniProt:F6HFW3	EMBL:FN595753
GO:GO:0000166	GO:GO:0003674	GO:GO:0003774	GO:GO:0003777	GO:GO:0003779	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0007018	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016459
GO:GO:0016787	InterPro:IPR001609	InterPro:Myosin_head_motor_dom	InterPro:P-loop_NTPase	PFAM:PF00063	PRINTS:PR00193
PFscan:PS51456	PANTHER:PTHR13140	PANTHER:PTHR13140:SF382	SMART:SM00242	SUPFAM:SSF52540	UniParc:UPI0002108A7C
ArrayExpress:VIT_04s0079g00370	EnsemblPlantsGene:VIT_04s0079g00370	EnsemblPlants:VIT_04s0079g00370.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:10810805..10812671

Molecular Weight (calculated)

47476.0 Da

IEP (calculated)

5.638

GRAVY (calculated)

-0.182

Length

411 amino acids

Sequence
(BLAST)

001: MLVPECKRTI TQILNALLSE KGTDASVLLC ILDIVKGWIE DVFNKPGISS VSSGFLTSRE IVSFLQKLSQ VEKQNFSPGA LEEWDQKYLQ SLYGICADLN
101: KYPLLFDWTV DKINNFIGQD PDSKVLIEVL DIYGFESFKT SSFEQFCINL AKEKLQQHFN QHVFKMEQEE YTKEEVDWSY IDYILDLIEK KPGDIIALLD
201: EACIFSSKPK LSPTDFTIYH YAGDVTYQTE HFLDKNKYYV VAEDQSLLSA SRCSLVADLF PPLPEESSKF SSIGSRLKQQ LQSLLETLNA TEPHSVCYVK
301: PNSPFKPSIF ENNNVLQQPR CGGALKVIRI SVYKRLILSD QIFNANHFPH QVIFNFLFQA RLFTGHQYFT YRSLHPSAPD RLHMFQMIVY LLLLEKELQL
401: EIQMMERRGC R

Best Arabidopsis Sequence Match ( AT2G31900.1 )
(BLAST)

0001: MGTPVNITLG SHVWVEDPEL AWISGEVTEI KGTNAKIVTA NGKTVVASIS SIYPKDTEAP PAGVDDMTKL AYLHEPGVLH NLDCRFALNE IYTYTGNILI
0101: AVNPFQRLPH LYSVHMMEQY KGAAFGELSP HLFAVADTSY RAMINEARSQ SILVSGESGA GKTETTKMLM RYLAFMGGRS DTEGRSVEQQ VLESNPVLEA
0201: FGNAKTVKNN NSSRFGKFVE IQFDKRGKIS GAAIRTYLLE RSRVCQVSDP ERNYHCFYML CAAPPEEAKK FKVGDPRTFH YLNQTNCYEV SNVDDAREYL
0301: ETRNAMDIVG IGQEAQDAIF RVVAAILHLG NVNFIKGEEA DSSKLRDDKS RYHLQTAAEL LMCNEKMMED SLCKRVIVTP DGNITKPLDP ESAASNRDAL
0401: AKTVYSRLFD WIVDKINSSI GQDPDAKSLI GVLDIYGFES FKINSFEQLC INLTNEKLQQ HFNQHVFKME QEEYTREEIN WSYVEFVDNQ DVLDLIEKKP
0501: GGIIALLDEA CMFPKSTHET FAQKMYQTYK GHKRFSKPKL AQTAFTVNHY AGDVTYSAEQ FLDKNKDYVV AEHQALLDAS KCSFVANLFP PLPEDASKQS
0601: KFSSIGTRFK QQLQALMETL NTTEPHYIRC VKPNAVLKPG IFENDNVLNQ LRCGGVLEAI RISCAGYPTK RAFDEFLDRF VMLATDVPEG SDEKSACASI
0701: CNKMGLKGYQ IGKTKIFLRA GQMAELDARR TEVLAGATKL IQRQIRTYLT RKEFLGQKRA TIYMQKLWRA KLARKLYQNM RREAASICIQ KNIRAHRARK
0801: NYTKLQASAT VIQTGLRTMS ARNKHRHRRR TKAAIIIQRE WRRHQVHEAY KKHKKATLAL QCLWRAKVAR KELKNLRMAA RETGALKEAK DKLEKRVEEL
0901: TWRLELEKNQ KADLEDAKAQ EIAKLQNNLT ELQEKLDEAY AAIIRDKEAA KLAIEQAPPI IKEVPVVDNT QLELLNSQNN ELEVEVAKLK GKIKEFEVKC
1001: FALENDSRAS VTEAEDAKSK AVEFQEIIER LHTNLSNLES ENQVLRQQAL AASTSVEEIG ELNSLKDKVA ILESENETLR RQTESAEKTM PPARVFASEK
1101: NLENEHQTKE IQATKEPRNP INVLAKQGSL TDRQQESHEV LMKCLTDERR FDNEKSVAAW IVYKALLQWR LFEAEKTNIF DRIVHKIRSS IEGQDDTREL
1201: AYWLTTSSTL LYLLQSTLKF SNTNNAASRR NRSSHATLFG RLVQGMQPSS VGLETSSGYS GMAGIPNDQQ MVEAKYPALL FKQHLAAYVE KTYGMIRDKL
1301: KKEINPLLNL CIHAPRPTRA KTLRDVTKSI HLTTIAKQQA SYVQWQNIVN KLEHTLTFMA ENHVPSMITR KLFHQVFSYI NVQLFNSLLL RRECCSVSNG
1401: EYLKMGLHEL EQWCLKADDE ATRSPWDELQ HIRQAVMFLV SHQKTQKSLD EIAKEICPVL SIPQVYRIGT MFWDDKYGTQ GLSPEVINQM RKLMTEDSAN
1501: MTYPSFLLDV DSSIPFSVED VSQSFHGGNI SLSDVDPSPL LRQRSDFHFL FQTLPE

Arabidopsis Description

XIFmyosin-like protein XIF [Source:TAIR;Acc:AT2G31900]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.