Factsheet for VIT_05s0051g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04600.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0268g00030.t01	Wine grape	cytosol	26.48	88.54
VIT_07s0005g04790.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.7	77.14
VIT_16s0115g00220.t01	Wine grape	cytosol	13.37	74.53
Os03t0860700-00	Rice	cytosol, plasma membrane	43.08	72.1
OQU85951	Sorghum	cytosol	72.72	71.14
TraesCS6D01G377100.1	Wheat	cytosol	72.18	71.13
TraesCS6A01G390800.2	Wheat	cytosol	72.18	71.13
TraesCS6B01G431400.1	Wheat	cytosol	72.04	70.99
HORVU6Hr1G091010.24	Barley	cytosol	72.04	70.95
Os02t0816900-01	Rice	cytosol, plasma membrane	60.35	70.76
Zm00001d018481_P033	Maize	cytosol	72.31	70.37
GSMUA_AchrUn_...	Banana	cytosol	71.1	68.7
GSMUA_Achr3P27420_001	Banana	cytosol	75.4	67.23
KXG34975	Sorghum	cytosol	64.58	66.64
Solyc09g091080.2.1	Tomato	cytosol	72.38	66.24
Zm00001d019495_P001	Maize	cytosol	66.33	65.54
TraesCS1D01G174000.2	Wheat	cytosol	65.93	65.01
HORVU1Hr1G044020.1	Barley	cytosol	65.86	64.94
TraesCS1A01G166900.2	Wheat	cytosol	65.86	64.9
TraesCS1B01G183200.1	Wheat	cytosol	65.73	64.77
EER90459	Sorghum	cytosol	64.52	64.69
Zm00001d034927_P001	Maize	cytosol	64.85	64.59
KRG89126	Soybean	cytosol	68.35	64.33
VIT_11s0016g01710.t01	Wine grape	cytosol	64.52	63.2
TraesCS4A01G313500.1	Wheat	cytosol	63.04	63.08
TraesCS5B01G566200.1	Wheat	cytosol	63.04	63.08
HORVU5Hr1G125430.15	Barley	cytosol	62.1	62.77
TraesCS5D01G558600.1	Wheat	cytosol	62.57	62.57
VIT_14s0081g00160.t01	Wine grape	cytosol	63.71	62.25
VIT_04s0079g00370.t01	Wine grape	cytosol	17.07	61.8
VIT_09s0002g01910.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	64.65	61.75
VIT_07s0005g02970.t01	Wine grape	cytosol	47.24	61.5
KRH40872	Soybean	cytosol	68.21	60.81
AT1G04600.1	Thale cress	cytosol	69.35	59.65
VIT_13s0320g00070.t01	Wine grape	cytosol	62.3	59.58
CDX86626	Canola	cytosol	68.01	57.89
CDY15512	Canola	cytosol	68.01	57.66
Bra030576.1-P	Field mustard	cytosol	65.12	57.3
CDX84695	Canola	cytosol	65.46	56.17
AT2G33240.1	Thale cress	cytosol	66.8	56.16
CDY19473	Canola	cytosol	65.79	55.91
CDX79520	Canola	endoplasmic reticulum	56.79	55.89
GSMUA_Achr1P03340_001	Banana	cytosol	67.54	54.09
CDY17154	Canola	cytosol	65.52	53.34
VIT_04s0008g01990.t01	Wine grape	cytosol	53.76	52.49
VIT_14s0030g02000.t01	Wine grape	cytosol	0.47	43.75
VIT_10s0071g00210.t01	Wine grape	plastid	25.6	32.29
VIT_19s0014g03640.t01	Wine grape	cytosol	24.6	30.58

Protein Annotations

Gene3D:1.10.10.820	Gene3D:1.20.120.720	Gene3D:1.20.5.190	Gene3D:1.20.58.530	EntrezGene:100259730	wikigene:100259730
MapMan:20.2.4.1	Gene3D:3.30.70.3240	Gene3D:3.40.850.10	EMBL:AM443474	ProteinID:CAN60836	ProteinID:CAN60836.1
ProteinID:CCB57489	ProteinID:CCB57489.1	ncoils:Coil	InterPro:Dilute_dom	UniProt:F6HS30	EMBL:FN596241
GO:GO:0000166	GO:GO:0003674	GO:GO:0003774	GO:GO:0003777	GO:GO:0003779	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0007015	GO:GO:0007018	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016459	GO:GO:0016787	InterPro:IPR000048
InterPro:IPR001609	InterPro:IPR002710	InterPro:IPR004009	InterPro:IPR036961	InterPro:IQ_motif_EF-hand-BS	InterPro:Kinesin_motor_dom_sf
EntrezGene:LOC100259730	wikigene:LOC100259730	InterPro:MYSc_Myo11	InterPro:MyosinXI_CBD	InterPro:Myosin_N	InterPro:Myosin_head_motor_dom
InterPro:P-loop_NTPase	PFAM:PF00063	PFAM:PF00612	PFAM:PF01843	PFAM:PF02736	PRINTS:PR00193
PFscan:PS50096	PFscan:PS51126	PFscan:PS51456	PFscan:PS51844	PANTHER:PTHR13140	PANTHER:PTHR13140:SF382
SMART:SM00015	SMART:SM00242	SMART:SM01132	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002108B81
ArrayExpress:VIT_05s0051g00050	EnsemblPlantsGene:VIT_05s0051g00050	EnsemblPlants:VIT_05s0051g00050.t01	RefSeq:XP_002285579	RefSeq:XP_002285579.1	SEG:seg

Description

No Description!

Coordinates

chr5:+:10177400..10289083

Molecular Weight (calculated)

169334.0 Da

IEP (calculated)

7.493

GRAVY (calculated)

-0.410

Length

1488 amino acids

Sequence
(BLAST)

0001: MQSVPVKVVV GSHVWVEDPE IAWIDGEVVE VNGEEIKIIC TSGKTIVANP SDVYPKDTEA PPHGIDDMTK LAYLHEPGVL QNLRCRYDIN EIYTYTGSIL
0101: IAVNPFQRLP HLYDNHVMEQ YKGAVFGELS PHPFAVADSA YRLMINDGVS QSILVSGESG AGKTESTKML MQYLAYMGGR AAAEGRTVEQ QVLESNPVLE
0201: AFGNAKTVRN NNSSRFGKFV EIQFDQRGRI SGAAIRTYLL ERSRVCQVSD PERNYHCFYM LCAAPPEDVE KYKLGDPRTF HYLNQSNCYE LDGVNDSKEY
0301: LATRRAMNVV GISSVEQDAI FRVVAAVLHL GNIEFAKGQE IDSSEPKDDK SRFHLRMAAE LFMCDEKSLE DSLCKRVIVT RDETITKWLD PDSAAVSRDA
0401: LAKIVYSRLF DWIVDKINNS IGQDPDSKVL IGVLDIYGFE SFKTNSFEQF CINLTNEKLQ QHFNQHVFKM EQEEYTKEEI DWSYIDYVDN QDILDLIEKK
0501: PGGIIALLDE ACMFPRSTHE TFSQKLYQTF KSHKRFSKPK LSPTDFTIYH YAGDVTYQTE HFLDKNKDYV VAEHQSLLSA SRCSFVADLF PPLPEESSKT
0601: SKFSSIGSRF KQQLQSLLET LSATEPHYVR CVKPNNLLKP SIFENNNVLQ QLRCGGVLEA IRISCAGFPT RRTFVEFIAR FGILAPDVLK GSCDEVTTSK
0701: RILEKVDLKG YQIGKTKVFL RAGQMAELDA RRNEVLGRSA SIIQRKVRSY LSRKSFVLLR QSAIQIQASC RVQVACHRYE KMRKEAACRT IQKDLRMYLA
0801: RKAYNRFCSS ALSIQTGMRA MGACNELRFR KQTKAAIIIK SRCRGYLAHL HYLRIKKAAI STQCAWRGKV ARRELRKLKI AAKETGALQA AKTMLEKQVE
0901: ELTCQLQLEK RMRADIEEAK TQENAKLQNA LQEMQVQFQE TKEMLIKERE NAKKADEKVP IIQEVPAIDH EMMNKLTAEN EKLKDLVSSL EKKIDETQRK
1001: YEETNKISEE RLKQALDAES KIIQLKTDMQ RLEEKLSDME TEDQILRQQV SLHSPVGKMS EHLAIASEPH LENGHHGTEE KKTSEPESAT PVKKFGTESD
1101: NKLRKSQIER QHESVDSLIK CVSQDLGFSN GKPVAAVTIY KCLLHWKSFE AEKTSVFDRL IQMIGSAFEN QDNNEHMAYW LSNTSTLLLL LQRSLRTTGA
1201: ASLQQKPPPA PSLFGRMAQG FRSSFSSANV SVDVVRQVEA KYPALLFKQQ LTAYVETIYG IIRDNLKKDL SSVLSSCIQE PETSRESSGQ SPGNSPLASP
1301: WQSIIKSLNE LLSTLTENFV SPVLVQKIFS QIFSYINSQL FNSLLLRREC CTFRNGEYVK SGLAELELWC GQTKEEYVGS SWDELKHIRQ AVGFLVIHQK
1401: SRISYDDLTN DLCPSLSVQQ LYRICTLYWD DNYNTRSVSP DVISSMREQM PEDSNDTATT HFCWVTIPAF LSQLMTFLVL FMRRISQM

Best Arabidopsis Sequence Match ( AT5G43900.3 )
(BLAST)

0001: MFLDAAKSDS RFSVCVCDTV LLYVYHVNKT KSPQKVEESR EARKGKNKIQ KAEVFDLRNE MVANFNPSVG SFVWVEDPDE AWIDGEVVQV NGDEIKVLCT
0101: SGKHVVTKIS NAYPKDVEAP ASGVDDMTRL AYLHEPGVLQ NLHSRYDINE IYTYTGSILI AVNPFRRLPH LYSSHMMAQY KGASLGELSP HPFAVADAAY
0201: RQMINDGVSQ SILVSGESGA GKTESTKLLM RYLAYMGGRA AAEGRSVEQK VLESNPVLEA FGNAKTVRNN NSSRFGKFVE IQFDEKGRIS GAAIRTYLLE
0301: RSRVCQVSDP ERNYHCFYML CAAPQEDVKK FKLEEPKKYH YLNQSKCLEL DSINDAEEYH ATRRAMDVVG ISTEEQDAIF SVVAAILHIG NIEFAKGEEI
0401: DSSIPKDDKS LFHLKTAAEL LSCDEKALED SLCKRIMVTR DETITKTLDP EAATLSRDAL AKVMYSRLFD WLVDKINSSI GQDHDSKYLI GVLDIYGFES
0501: FKTNSFEQFC INLTNEKLQQ HFNQHVFKME QEEYKKEEIN WSYIEFVDNQ DILDLIEKKP GGIIALLDEA CMFPRSTHET FAQKLYQTFK THKRFTKPKL
0601: ARSDFTICHY AGDVTYQTEL FLDKNKDYVI AEHQALLNSS SCSFVASLFP PMSDDSKQSK FSSIGTRFKQ QLVSLLEILN TTEPHYIRCI KPNNLLKPGI
0701: FENENILQQL RCGGVMEAIR ISCAGYPTRK HFDEFLARFG ILAPEVLVKN SDDPAACKKL LDKVGLEGYQ IGKTKVFLRA GQMADLDTRR TEVLGRSASI
0801: IQRKVRSYLA KKSFIVLRNS AKQIQSVCRG YLARSVYEGM RREAAALKIQ RDLRRFLARK AYTELYSAAV SVQAGMRGMV ARKELCFRRQ TKAAIIIQTW
0901: CRGYLARLHY RKLKKAAITT QCAWRSKVAR GELRKLKMAA RETGALQAAK NKLEKQVEEL TWRLQLEKRI RTDLEEAKKQ ESAKAQSSLE ELQLKCKETE
1001: ALLIKEREAA KKIAETAPII KEIPVVDQEL MDKITNENEK LKSMVSSLEM KIGETEKKLQ ETTKISQDRL NQALEAESKL VKLKTAMQRL EEKILDMEAE
1101: KKIMHQQTIS TPVRTNLGHP PTAPVKNLEN GHQTNLEKEF NEAEFTTPVD GKAGKSAAER QIMNVDALID CVKDNIGFSN GKPVAAFTIY KCLLHWKCFE
1201: SEKTNVFDRL IQMIGSAIEN EDDNSHLAYW LTSTSALLFL LQKSLKTNGS GATQSKKPPA STSLFGRMAM SFRSSPASGN LAAAAEAAAL AVVRPVEAKY
1301: PALLFKQQLA AYVEKMFGMV RDNLKRELST LLSLCIQAPR SSKGGMLRSG RSFGKDSPAV HWQSIIDGLN SLLVTLKENH VPLVLIQKIY SQTFSYINVQ
1401: LFNSLLLRKE CCTFSNGEFV KSGLAELELW CCQAKEYSGP SWEELKHIRQ AVGFLVIHQK YRISYDEIAN DLCPVLSVQQ LYRICTLYWD DSYNTRSVSQ
1501: EVISSMRTLM TEESNDADSD SFLLDDDSSI PFSIDDISSS MEEKDFVGIK PAEELLENPA FVFLH

Arabidopsis Description

MYA2Myosin 2 [Source:UniProtKB/TrEMBL;Acc:F4K7C5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.