Factsheet for VIT_16s0115g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04600.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0079g00370.t01	Wine grape	cytosol	90.26	58.64
VIT_00s0268g00030.t01	Wine grape	cytosol	68.54	41.12
Os03t0860700-00	Rice	cytosol, plasma membrane	53.56	16.09
Os02t0816900-01	Rice	cytosol, plasma membrane	64.04	13.48
VIT_05s0051g00050.t01	Wine grape	cytosol	74.53	13.37
VIT_07s0005g02970.t01	Wine grape	cytosol	54.31	12.69
VIT_07s0005g04790.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.42	11.86
TraesCS6B01G431400.1	Wheat	cytosol	63.67	11.26
TraesCS6A01G390800.2	Wheat	cytosol	63.67	11.26
TraesCS6D01G377100.1	Wheat	cytosol	63.67	11.26
OQU85951	Sorghum	cytosol	64.04	11.24
Zm00001d018481_P033	Maize	cytosol	64.04	11.18
VIT_14s0081g00160.t01	Wine grape	cytosol	63.67	11.16
HORVU6Hr1G091010.24	Barley	cytosol	62.92	11.12
GSMUA_AchrUn_...	Banana	cytosol	63.67	11.04
VIT_11s0016g01710.t01	Wine grape	cytosol	61.42	10.8
KXG34975	Sorghum	cytosol	57.3	10.61
GSMUA_Achr3P27420_001	Banana	cytosol	65.54	10.49
CDX79520	Canola	endoplasmic reticulum	58.8	10.38
VIT_09s0002g01910.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	60.3	10.33
Solyc09g091080.2.1	Tomato	cytosol	62.92	10.33
EER90459	Sorghum	cytosol	57.3	10.31
KRG89126	Soybean	cytosol	60.67	10.25
VIT_13s0320g00070.t01	Wine grape	cytosol	59.18	10.15
Zm00001d034927_P001	Maize	cytosol	56.55	10.11
TraesCS4A01G313500.1	Wheat	cytosol	56.18	10.09
TraesCS5B01G566200.1	Wheat	cytosol	56.18	10.09
KRH40872	Soybean	cytosol	62.92	10.07
HORVU5Hr1G125430.15	Barley	cytosol	55.43	10.05
TraesCS5D01G558600.1	Wheat	cytosol	55.81	10.01
Zm00001d019495_P001	Maize	cytosol	55.81	9.89
HORVU1Hr1G044020.1	Barley	cytosol	55.43	9.81
TraesCS1B01G183200.1	Wheat	cytosol	55.43	9.8
TraesCS1D01G174000.2	Wheat	cytosol	55.06	9.74
TraesCS1A01G166900.2	Wheat	cytosol	55.06	9.74
AT1G04600.1	Thale cress	cytosol	62.17	9.6
CDY15512	Canola	cytosol	61.42	9.34
CDX86626	Canola	cytosol	61.05	9.32
CDX84695	Canola	cytosol	60.3	9.28
CDY19473	Canola	cytosol	60.67	9.25
GSMUA_Achr1P03340_001	Banana	cytosol	64.04	9.2
VIT_04s0008g01990.t01	Wine grape	cytosol	52.43	9.19
AT2G33240.1	Thale cress	cytosol	60.3	9.1
CDY17154	Canola	cytosol	60.3	8.81
Bra030576.1-P	Field mustard	cytosol	50.19	7.92
VIT_10s0071g00210.t01	Wine grape	plastid	29.59	6.69
VIT_19s0014g03640.t01	Wine grape	cytosol	28.84	6.43
VIT_14s0030g02000.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.58.530	Gene3D:3.40.850.10	MapMan:35.1	ProteinID:CCB49983	ProteinID:CCB49983.1	UniProt:F6HCN8
EMBL:FN595518	GO:GO:0000166	GO:GO:0003674	GO:GO:0003774	GO:GO:0003777	GO:GO:0003779
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0007018	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016459	GO:GO:0016787	InterPro:IPR001609	InterPro:IPR036961	InterPro:Kinesin_motor_dom_sf	InterPro:Myosin_head_motor_dom
InterPro:P-loop_NTPase	PFAM:PF00063	PFscan:PS51456	PANTHER:PTHR13140	PANTHER:PTHR13140:SF382	SMART:SM00242
SUPFAM:SSF52540	UniParc:UPI00021092BA	ArrayExpress:VIT_16s0115g00220	EnsemblPlantsGene:VIT_16s0115g00220	EnsemblPlants:VIT_16s0115g00220.t01	:

Description

No Description!

Coordinates

chr16:+:3767497..3768676

Molecular Weight (calculated)

31269.5 Da

IEP (calculated)

7.635

GRAVY (calculated)

-0.370

Length

267 amino acids

Sequence
(BLAST)

001: MEQEEYTKEE IDWSYIDYIL DLIEKKPGDI IALLDEACIF PRSTHETFSQ KLYQTFKSHK RFSKPKLSPT DFTIYHYAGD VTYQTEHFLD KNKYYVVAEH
101: QSLLSASRCS LVADLFPPLP EESSKFSSIG SRLKQQLQSL LETLNATEPH SVCYVKPNSP FKPSIFENNN VLQQPRCGGA LKVIRISVYK RLILSDQIFN
201: ANHFPHQVII NFLFQARLFT GHQYFTYRSL HPSAPDRLHM FQMIVYLLLS EKELQLEIQM MERRGCR

Best Arabidopsis Sequence Match ( AT2G31900.1 )
(BLAST)

0001: MGTPVNITLG SHVWVEDPEL AWISGEVTEI KGTNAKIVTA NGKTVVASIS SIYPKDTEAP PAGVDDMTKL AYLHEPGVLH NLDCRFALNE IYTYTGNILI
0101: AVNPFQRLPH LYSVHMMEQY KGAAFGELSP HLFAVADTSY RAMINEARSQ SILVSGESGA GKTETTKMLM RYLAFMGGRS DTEGRSVEQQ VLESNPVLEA
0201: FGNAKTVKNN NSSRFGKFVE IQFDKRGKIS GAAIRTYLLE RSRVCQVSDP ERNYHCFYML CAAPPEEAKK FKVGDPRTFH YLNQTNCYEV SNVDDAREYL
0301: ETRNAMDIVG IGQEAQDAIF RVVAAILHLG NVNFIKGEEA DSSKLRDDKS RYHLQTAAEL LMCNEKMMED SLCKRVIVTP DGNITKPLDP ESAASNRDAL
0401: AKTVYSRLFD WIVDKINSSI GQDPDAKSLI GVLDIYGFES FKINSFEQLC INLTNEKLQQ HFNQHVFKME QEEYTREEIN WSYVEFVDNQ DVLDLIEKKP
0501: GGIIALLDEA CMFPKSTHET FAQKMYQTYK GHKRFSKPKL AQTAFTVNHY AGDVTYSAEQ FLDKNKDYVV AEHQALLDAS KCSFVANLFP PLPEDASKQS
0601: KFSSIGTRFK QQLQALMETL NTTEPHYIRC VKPNAVLKPG IFENDNVLNQ LRCGGVLEAI RISCAGYPTK RAFDEFLDRF VMLATDVPEG SDEKSACASI
0701: CNKMGLKGYQ IGKTKIFLRA GQMAELDARR TEVLAGATKL IQRQIRTYLT RKEFLGQKRA TIYMQKLWRA KLARKLYQNM RREAASICIQ KNIRAHRARK
0801: NYTKLQASAT VIQTGLRTMS ARNKHRHRRR TKAAIIIQRE WRRHQVHEAY KKHKKATLAL QCLWRAKVAR KELKNLRMAA RETGALKEAK DKLEKRVEEL
0901: TWRLELEKNQ KADLEDAKAQ EIAKLQNNLT ELQEKLDEAY AAIIRDKEAA KLAIEQAPPI IKEVPVVDNT QLELLNSQNN ELEVEVAKLK GKIKEFEVKC
1001: FALENDSRAS VTEAEDAKSK AVEFQEIIER LHTNLSNLES ENQVLRQQAL AASTSVEEIG ELNSLKDKVA ILESENETLR RQTESAEKTM PPARVFASEK
1101: NLENEHQTKE IQATKEPRNP INVLAKQGSL TDRQQESHEV LMKCLTDERR FDNEKSVAAW IVYKALLQWR LFEAEKTNIF DRIVHKIRSS IEGQDDTREL
1201: AYWLTTSSTL LYLLQSTLKF SNTNNAASRR NRSSHATLFG RLVQGMQPSS VGLETSSGYS GMAGIPNDQQ MVEAKYPALL FKQHLAAYVE KTYGMIRDKL
1301: KKEINPLLNL CIHAPRPTRA KTLRDVTKSI HLTTIAKQQA SYVQWQNIVN KLEHTLTFMA ENHVPSMITR KLFHQVFSYI NVQLFNSLLL RRECCSVSNG
1401: EYLKMGLHEL EQWCLKADDE ATRSPWDELQ HIRQAVMFLV SHQKTQKSLD EIAKEICPVL SIPQVYRIGT MFWDDKYGTQ GLSPEVINQM RKLMTEDSAN
1501: MTYPSFLLDV DSSIPFSVED VSQSFHGGNI SLSDVDPSPL LRQRSDFHFL FQTLPE

Arabidopsis Description

XIFmyosin-like protein XIF [Source:TAIR;Acc:AT2G31900]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.