Factsheet for VIT_01s0011g06310.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058661	Potato	plastid	41.0	70.59
Solyc01g005090.2.1	Tomato	nucleus	53.3	67.05
KRH58596	Soybean	mitochondrion	62.87	63.45
AT2G01900.3	Thale cress	mitochondrion	61.05	63.06
KRH42503	Soybean	cytosol	63.33	62.75
Bra026626.1-P	Field mustard	mitochondrion	60.59	62.0
CDY09402	Canola	mitochondrion	60.59	62.0
CDY15795	Canola	mitochondrion	60.36	61.77
KRH40911	Soybean	cytosol	63.1	61.28
KRH66073	Soybean	plastid	62.41	60.89
KRG89097	Soybean	cytosol	61.96	60.18
GSMUA_Achr9P15810_001	Banana	cytosol	44.87	58.81
GSMUA_Achr7P11300_001	Banana	mitochondrion	51.71	57.18
GSMUA_Achr3P07600_001	Banana	golgi, plasma membrane	46.24	55.46
GSMUA_Achr10P...	Banana	mitochondrion	54.9	55.02
GSMUA_Achr7P02400_001	Banana	endoplasmic reticulum, golgi, plastid	48.52	54.2
Zm00001d032253_P003	Maize	cytosol	41.91	53.64
Os09t0394600-01	Rice	mitochondrion	47.61	52.12
Zm00001d028366_P001	Maize	cytosol	53.76	51.87
TraesCS4B01G230100.1	Wheat	cytosol	54.44	51.51
TraesCS4A01G073900.1	Wheat	cytosol	54.44	51.4
TraesCS4D01G231500.1	Wheat	cytosol	54.21	51.18
Zm00001d020378_P001	Maize	cytosol, mitochondrion, nucleus, plastid	46.01	50.0
Os03t0238300-01	Rice	cytosol	55.58	49.29
KRH16316	Soybean	cytosol	13.21	48.33
TraesCS5B01G201300.1	Wheat	cytosol	46.24	47.76
OQU89459	Sorghum	cytosol	46.47	47.66
KXG39809	Sorghum	nucleus	53.76	47.48
EES15004	Sorghum	mitochondrion	43.05	47.37
Os08t0425500-01	Rice	cytosol	43.74	46.38
EES15005	Sorghum	cytosol	43.05	46.21
Zm00001d047972_P001	Maize	mitochondrion	53.76	46.0
TraesCS5A01G202800.2	Wheat	endoplasmic reticulum, vacuole	45.33	44.72
HORVU4Hr1G064440.3	Barley	cytosol, nucleus	54.21	44.65
TraesCS5D01G209200.2	Wheat	cytosol, peroxisome, plasma membrane	44.87	41.39
VIT_13s0073g00680.t01	Wine grape	cytosol	36.22	36.89
VIT_08s0040g02520.t01	Wine grape	cytosol	39.18	35.54
VIT_14s0066g02270.t01	Wine grape	cytosol	37.81	34.3
VIT_05s0020g03770.t01	Wine grape	cytosol, mitochondrion, nucleus	44.19	34.22
VIT_00s0556g00010.t01	Wine grape	golgi, vacuole	34.62	34.16
VIT_07s0151g00590.t01	Wine grape	nucleus	43.05	33.87
VIT_00s0357g00110.t01	Wine grape	golgi	33.71	31.76
GSMUA_Achr6P11400_001	Banana	cytosol, nucleus, peroxisome	56.72	28.59
VIT_02s0012g00550.t01	Wine grape	mitochondrion	38.72	27.07
VIT_18s0157g00210.t01	Wine grape	plastid	39.41	24.4

Protein Annotations

EntrezGene:100247486	wikigene:100247486	MapMan:27.5.4.1	Gene3D:3.60.10.10	ProteinID:CBI26781	ProteinID:CBI26781.3
UniProt:D7T8G0	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	EMBL:FN595752	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0046856
InterPro:IPPc	InterPro:IPR036691	EntrezGene:LOC100247486	wikigene:LOC100247486	PFAM:PF03372	PANTHER:PTHR11200
PANTHER:PTHR11200:SF63	SMART:SM00128	SUPFAM:SSF56219	UniParc:UPI00015C8D6F	ArrayExpress:VIT_01s0011g06310	EnsemblPlantsGene:VIT_01s0011g06310
EnsemblPlants:VIT_01s0011g06310.t01	RefSeq:XP_002281659	RefSeq:XP_002281659.1	RefSeq:XP_010648068.1	:	:

Description

No Description!

Coordinates

chr1:+:6108006..6110562

Molecular Weight (calculated)

49525.5 Da

IEP (calculated)

8.156

GRAVY (calculated)

-0.254

Length

439 amino acids

Sequence
(BLAST)

001: MWPRLVANKF LRKRICSNNF VADFPSNSGA LLQIPTLDEE SLVSTPIFDQ KEIPKYKIFV STWNVGGVAP PEGLNIEDWL DTCKTSCDIY VLGFQEVVPL
101: NAANILGSEN SKIAMKWNSL IREALNKRVR SRDKNEIDKQ AGEMQNGFPV KDGKLVIESR GPQDYRCIIS KQMVGILISV WVRSSLLPYI QHPSVSCVGC
201: GIMGCLGNKG SVSIRFLLHG TSFCFVCCHL ASGGRVGHER HRNSNAADIL SRTSFPRGPS LDVPQKILDH DRVILLGDLN YRVSLPEETT RLLVDKREWS
301: TLLENDQLMM EVMDGQVLGG WQEGHIEFAP TYKYYPNSDV YYGGSQGQKG EKRRAPAWCD RIIWYGKGLK QQLYTRGEVK ISDHRPVKAI FTAEVGVLLT
401: LKEFQTFFLT SDRFEQIASR FDPISTDEFL CSGRSSFHI

Best Arabidopsis Sequence Match ( AT2G01900.3 )
(BLAST)

001: MLGSYREVMW PRLVANKILR KSLGSNNFVA DFPPNTDQKL IEASGLADER SKSILHNQHK TTLLNYKVFV STWNVGGIVP DDGLDMEDLL ETHKTPCDIY
101: VLGFQEVVPL RASNVLGSDN NKVSTKWNSL IRDALNKRAR PHRDEDLSES KGINGISQDF RCIISKQMVG ILITVWVRGD LWPYIRYPSV SCVGCGIMGC
201: LGNKGSVSVR FQLHETTFCF VCSHLASGGR DRDERQRNSD VNEILARSSF PRGSSLDLPK KILDHDRVIF LGDLNYRISL PEEKTRLLVE SKKWNILLEN
301: DQLRMEIMNG QIFRGWQEGI VKFAPTYKYV PNSDLYYGCI TYKKDEKKRA PAWCDRIIWY GNGLKQHEYT RGETKISDHR PVKAIFTTEI TVTRRGKKIR
401: NFFFSDRFEE RIGDIDSKDY SWIST

Arabidopsis Description

DNAse I-like superfamily protein [Source:TAIR;Acc:AT2G01900]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.