CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70268	Canola	plastid	70.61	60.66
Bra009495.1-P	Field mustard	plastid	69.85	54.95
AT5G03990.1	Thale cress	nucleus, plastid	47.71	41.39
GSMUA_AchrUn_...	Banana	nucleus	32.44	23.94
TraesCS5A01G135600.1	Wheat	nucleus	25.95	22.74
TraesCS5B01G134500.1	Wheat	nucleus	25.57	22.19
TraesCS5D01G142200.1	Wheat	nucleus	25.19	22.07
EES03760	Sorghum	nucleus	27.86	21.47
Zm00001d012569_P001	Maize	nucleus	27.48	21.36
Os01t0801200-01	Rice	nucleus	27.48	21.11
Zm00001d043187_P001	Maize	nucleus	27.1	20.82
HORVU5Hr1G043530.1	Barley	nucleus	23.66	20.67
TraesCS3A01G330400.1	Wheat	nucleus	27.1	20.23
TraesCS3B01G360400.1	Wheat	nucleus	27.1	20.17
TraesCS3D01G323800.1	Wheat	nucleus	27.1	20.11
Os11t0140900-01	Rice	nucleus	20.99	20.07
Zm00001d010383_P001	Maize	cytosol	27.1	19.89
Zm00001d052461_P001	Maize	nucleus	21.37	19.79
OQU82840	Sorghum	nucleus	20.61	19.15
KXG22825	Sorghum	mitochondrion, nucleus	22.9	19.05
Zm00001d016089_P001	Maize	extracellular, plasma membrane, vacuole	20.99	18.52
Zm00001d023249_P001	Maize	mitochondrion, nucleus	22.52	18.44
Os12t0137400-00	Rice	endoplasmic reticulum, nucleus	21.37	18.24
CDX73674	Canola	mitochondrion, nucleus	25.95	16.31
CDX78048	Canola	mitochondrion, nucleus	25.57	15.91
Zm00001d044634_P002	Maize	nucleus	22.52	14.46
KXG22823	Sorghum	nucleus	22.14	12.95
KXG22824	Sorghum	nucleus	13.74	12.86

Protein Annotations

EnsemblPlants:CDY41412	EnsemblPlantsGene:GSBRNA2T00073000001	PANTHER:PTHR34567	PANTHER:PTHR34567:SF2	ProteinID:CDY41412	ProteinID:CDY41412.1
SEG:seg	UniParc:UPI0004EDC773	UniProt:A0A078HU79	MapMan:35.2	:	:

Description

BnaCnng10480DBnaCnng10480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU79]

Coordinates

chrLK032497:-:189383..190401

Molecular Weight (calculated)

30298.3 Da

IEP (calculated)

4.995

GRAVY (calculated)

-1.179

Length

262 amino acids

Sequence
(BLAST)

001: MNVNKIVNTN CKQSVPAWEK DFCAKVGSVP WSKVLEAKRF MHLYERVVQW DDSAGEDAFN KAKSHYWAEI NGVSCDLPLP DPDVYIDDVD WDAQVDNELV
101: LDLERGGPDP RTREGEEHVV ILDALFSSGQ YSGQGWGTGW GDAEGVNVGK PENSWDDQHC DGWNQDSWGR KEEPVGWDHE DKNNNSFRRE TWEYKNRNSF
201: NYKKVGNWNG NDHHHQGREW RKRGAVPREG EQVDDCRWRN GRGRSRGGFQ QHSNGWGWTE TF

Best Arabidopsis Sequence Match ( AT5G03990.1 )
(BLAST)

001: MSNWRRQKPR NNNSNNYSRQ RGTTMTQSSS KPPLANCKIS VPAWEKDFCA VIGSVPWWKV VEAKRFMHIY DRVVQWDDSA GEDAFKNAKS RFWAEINGLT
101: CDLSLPDPDV YIDDVDWDAE VDNELILDLE RGPDPLTEEQ EHVVILDALV LSGQYGGLGW GTGWGDAEGI NEENVGKGKP ENSWGDQKYD GWNEDSWGIK
201: EKTETWDHNN NNTNTDSWDH NNNFKAETWD QKNCNNNSFN YKKVENWNGR DQGRENRGWR KRGEGRHGGE RVEDCRWRNG RGRSRGGFQQ HSANAWGWTE
301: SF

Arabidopsis Description

FK506-binding-like protein [Source:UniProtKB/TrEMBL;Acc:Q93XY4]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.