Factsheet for GSMUA_AchrUn_randomP06680_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P31460_001	Banana	cytosol	81.22	75.83
GSMUA_Achr3P29740_001	Banana	cytosol, plastid	76.14	75.76
VIT_13s0064g00740.t01	Wine grape	cytosol	73.6	67.44
KRH32950	Soybean	cytosol	69.54	66.83
KRH39935	Soybean	cytosol	74.11	65.47
GSMUA_Achr4P03590_001	Banana	plastid	80.2	63.97
TraesCS4A01G277200.1	Wheat	cytosol	70.56	62.61
TraesCS4D01G033800.1	Wheat	cytosol	69.54	60.89
TraesCS4B01G035700.1	Wheat	cytosol	69.54	60.62
EER93620	Sorghum	cytosol	70.56	59.91
VIT_08s0007g08340.t01	Wine grape	cytosol	67.51	59.91
GSMUA_Achr3P25920_001	Banana	cytosol	64.47	59.35
GSMUA_Achr1P09040_001	Banana	cytosol	63.45	57.34
GSMUA_Achr6P36490_001	Banana	cytosol	62.94	57.14
Zm00001d033605_P001	Maize	cytosol	69.04	57.14
GSMUA_AchrUn_...	Banana	cytosol	57.36	55.94
GSMUA_Achr11P...	Banana	cytosol, plastid	61.42	55.25
GSMUA_Achr8P04060_001	Banana	cytosol	62.94	54.87
GSMUA_Achr8P19190_001	Banana	cytosol	61.42	54.02
GSMUA_Achr2P03620_001	Banana	cytosol	59.9	53.88
GSMUA_Achr2P08380_001	Banana	cytosol	62.44	53.71
GSMUA_Achr7P04070_001	Banana	cytosol	58.38	53.49
GSMUA_Achr1P07310_001	Banana	cytosol, mitochondrion	58.88	52.97
GSMUA_Achr2P08480_001	Banana	mitochondrion	67.01	52.17
GSMUA_Achr6P35930_001	Banana	cytosol	57.36	50.67
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	39.59	50.32
GSMUA_AchrUn_...	Banana	cytosol	59.39	47.37
GSMUA_Achr2P00980_001	Banana	cytosol	59.39	47.37
HORVU4Hr1G005660.7	Barley	nucleus	49.75	44.34

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP06680_001	EnsemblPlants:GSMUA_AchrUn_randomT06680_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG06680_001	Gene3D:3.40.50.450	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009987	GO:GO:0016787
InterPro:LOG	InterPro:LOG_fam	PANTHER:PTHR31223	PANTHER:PTHR31223:SF8	PFAM:PF03641	SUPFAM:SSF102405
TIGRFAMs:TIGR00730	UniParc:UPI0002961538	UniProt:M0U6X9	MapMan:11.4.1.2	:	:

Description

Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG06680_001]

Coordinates

chrchrUn_random:+:27716690..27718038

Molecular Weight (calculated)

21131.4 Da

IEP (calculated)

4.629

GRAVY (calculated)

-0.043

Length

197 amino acids

Sequence
(BLAST)

001: MESNQPNAMG CGGKGRFRRI CVFCGSRSGN NPSFGEAAID LGKQLVERKI DLVYGGGSVG LMGLISKTVL DGGCHVLGVI PTSVLPSEVS GESIGEVKVV
101: ADMHERKSEM AKHADAFIAL PGGYGTMEEL LEIVAWYQLG IHDKPVGLLN VDGYYDSLLA LFDKGVEEGF IEGSARHIVV SAENAEELIR RMEENET

Best Arabidopsis Sequence Match ( AT2G28305.1 )
(BLAST)

001: MEIESKFKRI CVFCGSSAGN KVSYKDAAIE LGTELVSRNI DLVYGGGSIG LMGLISQAVF NGGRHVIGVI PKTLMPREIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR

Arabidopsis Description

LOG1Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178VS96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.