CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15571	Soybean	cytosol	85.71	89.36
KRH61512	Soybean	cytosol	66.67	72.06
VIT_04s0008g01120.t01	Wine grape	cytosol	59.86	64.23
CDX68934	Canola	cytosol	60.54	61.81
AT4G33040.1	Thale cress	cytosol	60.54	61.81
Bra011408.1-P	Field mustard	cytosol	59.86	61.54
CDX75319	Canola	cytosol	59.18	60.42
Bra037028.1-P	Field mustard	cytosol	57.82	60.28
CDY13515	Canola	cytosol	57.14	59.57
CDY28280	Canola	cytosol	57.82	59.03
CDX72386	Canola	cytosol	56.46	58.87
Solyc08g062970.1.1	Tomato	cytosol	53.74	56.83
CDY45025	Canola	cytosol	55.1	56.25
KRH52204	Soybean	cytosol	53.06	55.71
Bra034545.1-P	Field mustard	cytosol	54.42	55.56
Solyc11g069940.1.1	Tomato	cytosol	53.06	54.93
PGSC0003DMT400021236	Potato	cytosol	51.7	52.78
PGSC0003DMT400050646	Potato	cytosol	48.98	50.0
Zm00001d008843_P001	Maize	cytosol	36.05	44.17
Zm00001d039468_P001	Maize	cytosol	35.37	43.33
GSMUA_Achr7P13560_001	Banana	cytosol	32.65	42.86
Zm00001d037757_P001	Maize	cytosol	35.37	42.62
EES02308	Sorghum	cytosol	34.69	42.5
TraesCS3A01G105300.1	Wheat	cytosol	34.01	41.67
TraesCS3B01G123700.1	Wheat	cytosol	34.01	41.67
TraesCS3D01G107400.1	Wheat	cytosol	34.01	41.67
Os05t0198200-00	Rice	cytosol	38.78	41.3
GSMUA_Achr10P...	Banana	mitochondrion	34.01	40.0
GSMUA_Achr5P06460_001	Banana	cytosol, mitochondrion	32.65	39.02
Os01t0194600-02	Rice	cytosol	31.97	37.6
EES17851	Sorghum	cytosol	36.05	36.3
KRH20376	Soybean	plastid	31.97	34.56
KRH21345	Soybean	plastid	29.93	33.08
KRH10949	Soybean	cytosol	29.25	32.33
KRH25663	Soybean	cytosol, plastid	31.97	27.17
KRH26996	Soybean	mitochondrion	28.57	26.25
KRH22331	Soybean	mitochondrion	29.93	25.29
KRH55866	Soybean	cytosol, plastid	27.89	23.84

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	EMBL:ACUP02010745	EnsemblPlantsGene:GLYMA_17G227700	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114
InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	UniProt:I1MX98	InterPro:IPR002109	EnsemblPlants:KRH05438	ProteinID:KRH05438
ProteinID:KRH05438.1	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF56	SUPFAM:SSF52833
TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0001876D6E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:38259023..38262073

Molecular Weight (calculated)

15700.8 Da

IEP (calculated)

6.216

GRAVY (calculated)

0.179

Length

147 amino acids

Sequence
(BLAST)

001: MQGLRRCSND VVQLDLSTPT TTTTTTTTTT NNTNSSSFSS SCSLSIDVDE STEARIQRLI SEHPVIIFTR SSCCMCHVMK KLLATIGVNP TVIELDDHEI
101: AALPLPDHRT PAVFIGGSSV GGLESLVALH VSGHLVPKLV QVGALWV

Best Arabidopsis Sequence Match ( AT4G33040.1 )
(BLAST)

001: MMQELGLQRF SNDVVRLDLT PPSQTSSTSL SIDEEESTEA KIRRLISEHP VIIFSRSSCC MCHVMKRLLA TIGVIPTVIE LDDHEVSSLP TALQDEYSGG
101: VSVVGPPPAV FIGRECVGGL ESLVALHLSG QLVPKLVQVG ALWV

Arabidopsis Description

GRXC6Glutaredoxin-C6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.