Factsheet for VIT_04s0008g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006132.1-P	Field mustard	extracellular	40.15	77.46
Solyc08g062970.1.1	Tomato	cytosol	69.34	68.35
KRH15571	Soybean	cytosol	64.96	63.12
Solyc11g069940.1.1	Tomato	cytosol	63.5	61.27
KRH61512	Soybean	cytosol	59.85	60.29
KRH05438	Soybean	cytosol	64.23	59.86
CDX70434	Canola	cytosol, plastid	60.58	59.29
AT4G33040.1	Thale cress	cytosol	62.04	59.03
Bra037028.1-P	Field mustard	cytosol	59.85	58.16
CDX72386	Canola	cytosol	59.85	58.16
Bra011408.1-P	Field mustard	cytosol	60.58	58.04
CDX78456	Canola	plastid	59.12	57.86
CDX75319	Canola	cytosol	60.58	57.64
CDY13515	Canola	cytosol	59.12	57.45
CDX68934	Canola	cytosol	59.85	56.94
PGSC0003DMT400021236	Potato	cytosol	59.85	56.94
CDY28280	Canola	cytosol	59.12	56.25
PGSC0003DMT400050646	Potato	cytosol	59.12	56.25
CDX69718	Canola	cytosol, plastid	56.2	55.0
CDX97156	Canola	cytosol, plastid	56.2	55.0
CDY45025	Canola	cytosol	57.66	54.86
Bra008925.1-P	Field mustard	cytosol, plastid	55.47	54.29
Bra034545.1-P	Field mustard	cytosol	55.47	52.78
AT5G11930.1	Thale cress	cytosol, plastid	56.93	52.7
KRH52204	Soybean	cytosol	50.37	49.29
GSMUA_Achr7P13560_001	Banana	cytosol	40.15	49.11
Zm00001d008843_P001	Maize	cytosol	41.61	47.5
EES02308	Sorghum	cytosol	41.61	47.5
Zm00001d037757_P001	Maize	cytosol	41.61	46.72
TraesCS3D01G107400.1	Wheat	cytosol	40.15	45.83
TraesCS3B01G123700.1	Wheat	cytosol	40.15	45.83
Zm00001d039468_P001	Maize	cytosol	40.15	45.83
TraesCS3A01G105300.1	Wheat	cytosol	40.15	45.83
GSMUA_Achr5P06460_001	Banana	cytosol, mitochondrion	39.42	43.9
Os05t0198200-00	Rice	cytosol	43.8	43.48
GSMUA_Achr10P...	Banana	mitochondrion	39.42	43.2
Os01t0194600-02	Rice	cytosol	38.69	42.4
EES17851	Sorghum	cytosol	43.8	41.1
VIT_12s0028g03010.t01	Wine grape	cytosol	36.5	35.46
VIT_10s0003g00390.t01	Wine grape	cytosol	37.23	34.0
VIT_00s0199g00290.t01	Wine grape	extracellular	21.9	25.21

Protein Annotations

EntrezGene:100268063	wikigene:100268063	MapMan:18.8.2	Gene3D:3.40.30.10	UniProt:A5BXC8	EMBL:AM474585
ProteinID:CAN83675	ProteinID:CAN83675.1	ProteinID:CCB46561	ProteinID:CCB46561.1	EMBL:FN595231	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	InterPro:Glutaredoxin_subgr	InterPro:IPR002109	EntrezGene:LOC100268063
wikigene:LOC100268063	PFAM:PF00462	PRINTS:PR00160	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF56
SUPFAM:SSF52833	TIGR:TC64726	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0001524892	ArrayExpress:VIT_04s0008g01120
EnsemblPlantsGene:VIT_04s0008g01120	EnsemblPlants:VIT_04s0008g01120.t01	RefSeq:XP_002278652	RefSeq:XP_002278652.1	:	:

Description

No Description!

Coordinates

chr4:+:932041..932784

Molecular Weight (calculated)

14682.0 Da

IEP (calculated)

6.341

GRAVY (calculated)

0.331

Length

137 amino acids

Sequence
(BLAST)

001: MQGVRRFRTL TEGGVRLELT PTTTSPLAID VTESTEMRIQ RLISENPVII FSRPSCCMCH VMKRLLSTIG VHPTVIELDD EEIGALAAHS ADSTSTAPVA
101: PAVFIGGTRV GGLESLVALH LSGHLVPRLV EVGALWV

Best Arabidopsis Sequence Match ( AT4G33040.1 )
(BLAST)

001: MMQELGLQRF SNDVVRLDLT PPSQTSSTSL SIDEEESTEA KIRRLISEHP VIIFSRSSCC MCHVMKRLLA TIGVIPTVIE LDDHEVSSLP TALQDEYSGG
101: VSVVGPPPAV FIGRECVGGL ESLVALHLSG QLVPKLVQVG ALWV

Arabidopsis Description

GRXC6Glutaredoxin-C6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.