Factsheet for VIT_12s0028g03010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030545.1-P	Field mustard	cytosol	39.01	58.51
GSMUA_Achr6P27020_001	Banana	cytosol	38.3	57.45
VIT_10s0003g00390.t01	Wine grape	cytosol	60.28	56.67
Solyc10g008150.1.1	Tomato	cytosol	43.26	55.96
TraesCS7D01G442400.1	Wheat	cytosol	43.97	55.86
TraesCS5A01G096900.1	Wheat	cytosol	37.59	55.79
GSMUA_Achr3P15490_001	Banana	plastid	45.39	54.24
PGSC0003DMT400024317	Potato	plastid	56.74	53.33
KRH26996	Soybean	mitochondrion	59.57	52.5
Solyc07g053550.1.1	Tomato	cytosol	53.19	50.68
TraesCS1D01G405200.1	Wheat	plastid	46.81	50.0
GSMUA_Achr10P...	Banana	cytosol	43.26	50.0
TraesCS1B01G425500.1	Wheat	cytosol	48.23	50.0
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	37.59	49.53
PGSC0003DMT400056253	Potato	plastid	49.65	48.61
TraesCS3D01G244800.1	Wheat	plastid	47.52	48.55
KRH22331	Soybean	mitochondrion	59.57	48.28
TraesCS3B01G272600.1	Wheat	plastid	46.81	48.18
TraesCS3A01G246700.1	Wheat	plastid	46.81	47.83
HORVU3Hr1G061080.1	Barley	plastid	46.81	47.48
Zm00001d009568_P001	Maize	cytosol	44.68	47.01
TraesCS1A01G396900.1	Wheat	cytosol	48.23	46.9
TraesCS1D01G404800.1	Wheat	cytosol	48.23	46.9
GSMUA_Achr7P10990_001	Banana	cytosol	48.23	46.58
TraesCS1B01G425200.1	Wheat	plastid	47.52	46.53
TraesCS6B01G132800.1	Wheat	cytosol	46.1	46.43
KRH25663	Soybean	cytosol, plastid	56.74	46.24
KRH55866	Soybean	cytosol, plastid	56.03	45.93
OQU78423	Sorghum	cytosol, mitochondrion	48.23	45.64
TraesCS3B01G194500.1	Wheat	cytosol	36.17	45.54
Os01t0667900-01	Rice	cytosol	46.81	44.9
TraesCS3A01G147400.1	Wheat	cytosol, plastid	44.68	44.68
TraesCS3D01G169500.1	Wheat	cytosol	35.46	44.64
VIT_00s0199g00290.t01	Wine grape	extracellular	37.59	44.54
Zm00001d039011_P001	Maize	cytosol	45.39	44.44
Os01t0241400-01	Rice	cytosol, plastid	42.55	44.12
TraesCS5A01G064100.1	Wheat	cytosol	42.55	43.48
HORVU1Hr1G092260.1	Barley	mitochondrion	46.81	43.42
TraesCS4A01G254400.1	Wheat	plastid	42.55	43.17
HORVU2Hr1G026710.1	Barley	cytosol	34.04	42.86
Zm00001d011543_P001	Maize	extracellular	48.23	42.77
Zm00001d043932_P001	Maize	cytosol	48.23	42.77
TraesCS2A01G232700.1	Wheat	cytosol	41.13	42.65
TraesCS2B01G174000.1	Wheat	cytosol	32.62	41.07
TraesCS4A01G254500.1	Wheat	plastid	42.55	40.82
HORVU2Hr1G057870.1	Barley	cytosol	46.81	40.74
TraesCS1A01G397200.1	Wheat	plastid	47.52	40.61
EES03406	Sorghum	cytosol, plastid	48.23	40.48
TraesCS2A01G149100.1	Wheat	cytosol	31.91	40.18
CDY32516	Canola	plastid	42.55	38.96
Bra032540.1-P	Field mustard	plastid	42.55	38.96
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	47.52	38.95
CDY18190	Canola	plastid	42.55	38.71
CDY10096	Canola	plastid	41.84	38.31
CDX89861	Canola	plastid	41.84	38.06
Bra015272.1-P	Field mustard	plastid	41.84	38.06
HORVU1Hr1G087630.3	Barley	mitochondrion	46.81	37.29
VIT_04s0008g01120.t01	Wine grape	cytosol	35.46	36.5
HORVU3Hr1G032820.1	Barley	plastid	39.01	35.71
HORVU3Hr1G065250.1	Barley	plastid	42.55	35.71
HORVU1Hr1G087600.1	Barley	plastid	46.81	34.92
TraesCS3A01G163500.1	Wheat	plastid	36.88	30.95
AT1G03850.1	Thale cress	cytosol	34.75	30.82
CDY44992	Canola	cytosol	41.84	30.57
TraesCS2D01G153900.1	Wheat	cytosol	33.33	27.98

Protein Annotations

EntrezGene:100247528	wikigene:100247528	MapMan:18.8.2	Gene3D:3.40.30.10	EMBL:AM425292	ProteinID:CAN60168
ProteinID:CAN60168.1	ProteinID:CCB47316	ProteinID:CCB47316.1	UniProt:F6H5F4	EMBL:FN595235	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	InterPro:IPR002109	EntrezGene:LOC100247528	wikigene:LOC100247528
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF111	SUPFAM:SSF52833	TIGR:TC57849
TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0001985895	ArrayExpress:VIT_12s0028g03010	EnsemblPlantsGene:VIT_12s0028g03010	EnsemblPlants:VIT_12s0028g03010.t01
unigene:Vvi.1225	RefSeq:XP_002262673	RefSeq:XP_002262673.1	:	:	:

Description

No Description!

Coordinates

chr12:+:3752304..3752964

Molecular Weight (calculated)

15180.8 Da

IEP (calculated)

6.242

GRAVY (calculated)

0.228

Length

141 amino acids

Sequence
(BLAST)

001: MQEALPYKTW LPIPREPRIN TPTTPLHNQL LLPGTTNITN MVSENAVIVF GRRGCCMTHV VKRLLLGLGV NPAVCEVNEE DEIGVLDELG MVGAGEGKQG
101: AVQFPAVFIG GRLFGGLDRV MAAHITGELV PILKQAGALW L

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.