Factsheet for Os01t0241400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 2
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0194300-01
Os01t0279900-01
Os01t0808100-01
Os02t0747400-01
Os03t0318600-01
Os05t0492000-00
Os06t0226700-01
Os07t0687700-01
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	Os11t0171500-01	AT4G09570.1	19130088
AT1G03850.1	Os12t0169800-00	AT4G09570.1	19130088
AT1G28480.1	Os01t0194300-01	AT1G64280.1	17397508
AT1G28480.1	Os02t0747400-01	AT3G47620.1	21798944
AT1G28480.1	Os06t0226700-01	AT3G47620.1	21798944
AT1G28480.1	Os01t0279900-01	AT5G06960.1	21798944
AT1G28480.1	Os01t0808100-01	AT5G06960.1	21798944
AT1G28480.1	Os03t0318600-01	AT5G06960.1	21798944
AT1G28480.1	Os05t0492000-00	AT5G06960.1	21798944
AT1G28480.1	Os07t0687700-01	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G194500.1	Wheat	cytosol	59.56	72.32
TraesCS3D01G169500.1	Wheat	cytosol	58.09	70.54
TraesCS2B01G174000.1	Wheat	cytosol	50.74	61.61
TraesCS2A01G149100.1	Wheat	cytosol	50.0	60.71
HORVU2Hr1G026710.1	Barley	cytosol	50.0	60.71
GSMUA_Achr10P...	Banana	cytosol	53.68	59.84
Bra030545.1-P	Field mustard	cytosol	36.03	52.13
HORVU3Hr1G032820.1	Barley	plastid	58.82	51.95
GSMUA_Achr7P10990_001	Banana	cytosol	53.68	50.0
TraesCS3A01G163500.1	Wheat	plastid	58.82	47.62
Os01t0667900-01	Rice	cytosol	47.79	44.22
AT1G28480.1	Thale cress	cytosol	44.12	43.8
CDX94626	Canola	cytosol	40.44	42.97
KRH20376	Soybean	plastid	42.65	42.65
VIT_12s0028g03010.t01	Wine grape	cytosol	44.12	42.55
CDY34097	Canola	cytosol	41.91	41.61
Bra032911.1-P	Field mustard	cytosol	41.91	41.61
CDY15662	Canola	cytosol	38.97	41.41
Solyc10g008150.1.1	Tomato	cytosol	33.09	41.28
TraesCS2D01G153900.1	Wheat	cytosol	50.74	41.07
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	51.47	40.7
CDY30815	Canola	cytosol	38.24	40.62
Bra030102.1-P	Field mustard	cytosol	39.71	39.71
VIT_10s0003g00390.t01	Wine grape	cytosol	43.38	39.33
KRH10949	Soybean	cytosol	38.24	39.1
KRH21345	Soybean	plastid	38.24	39.1
Solyc10g008930.1.1	Tomato	cytosol	36.03	38.58
PGSC0003DMT400024317	Potato	plastid	41.91	38.0
Solyc07g053550.1.1	Tomato	cytosol	41.18	37.84
Os05t0198200-00	Rice	cytosol	36.76	36.23
Os01t0194600-02	Rice	cytosol	33.09	36.0
KRH26996	Soybean	mitochondrion	41.18	35.0
PGSC0003DMT400056253	Potato	plastid	35.29	33.33
KRH55866	Soybean	cytosol, plastid	41.91	33.14
KRH25663	Soybean	cytosol, plastid	41.91	32.95
KRH22331	Soybean	mitochondrion	39.71	31.03
CDX89861	Canola	plastid	32.35	28.39
CDY18190	Canola	plastid	32.35	28.39
Bra015272.1-P	Field mustard	plastid	32.35	28.39
Solyc02g077580.1.1	Tomato	cytosol, plastid	29.41	27.97
CDY32516	Canola	plastid	31.62	27.92
Bra032540.1-P	Field mustard	plastid	31.62	27.92
PGSC0003DMT400058776	Potato	plastid	36.76	27.78
VIT_00s0199g00290.t01	Wine grape	extracellular	24.26	27.73
CDY10096	Canola	plastid	30.88	27.27
AT1G03850.1	Thale cress	cytosol	25.74	22.01
CDY44992	Canola	cytosol	30.88	21.76

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	EntrezGene:4327691	EMBL:AK107708	ProteinID:BAD81621.1	ProteinID:BAD81651.1
ProteinID:BAF04466.1	ProteinID:BAS71274.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	InterPro:IPR002109	EnsemblPlantsGene:Os01g0241400	EnsemblPlants:Os01t0241400-01	PFscan:PS51354
PANTHER:PTHR10168	PANTHER:PTHR10168:SF120	UniProt:Q0JP62	SUPFAM:SSF52833	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf
UniParc:UPI0000DD8A3A	RefSeq:XP_015644615.1	SEG:seg	:	:	:

Description

GLUTAREDOXIN 3Thioredoxin fold domain containing protein. (Os01t0241400-01)

Coordinates

chr1:+:7817704..7818394

Molecular Weight (calculated)

13807.8 Da

IEP (calculated)

8.247

GRAVY (calculated)

0.172

Length

136 amino acids

Sequence
(BLAST)

001: MQGARSAAAM AAAAADEERE VRRAVEEKPV VVVGRRGCCM AHVARRLLLG QGANPAVLEV GDDADPAALV DAALQARRRK DGGDKAAAGD GGGGAAVAFP
101: AVFIGGRLVG GLDRLMAMHM AGELVPVLKQ AGALWL

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.