Factsheet for Os01t0667900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0194300-01
Os01t0279900-01
Os01t0808100-01
Os02t0747400-01
Os03t0318600-01
Os05t0492000-00
Os06t0226700-01
Os07t0687700-01
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	Os11t0171500-01	AT4G09570.1	19130088
AT1G03850.1	Os12t0169800-00	AT4G09570.1	19130088
AT1G28480.1	Os01t0194300-01	AT1G64280.1	17397508
AT1G28480.1	Os02t0747400-01	AT3G47620.1	21798944
AT1G28480.1	Os06t0226700-01	AT3G47620.1	21798944
AT1G28480.1	Os01t0279900-01	AT5G06960.1	21798944
AT1G28480.1	Os01t0808100-01	AT5G06960.1	21798944
AT1G28480.1	Os03t0318600-01	AT5G06960.1	21798944
AT1G28480.1	Os05t0492000-00	AT5G06960.1	21798944
AT1G28480.1	Os07t0687700-01	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G246700.1	Wheat	plastid	73.47	78.26
TraesCS3D01G244800.1	Wheat	plastid	72.79	77.54
TraesCS3B01G272600.1	Wheat	plastid	70.07	75.18
HORVU3Hr1G061080.1	Barley	plastid	68.71	72.66
Zm00001d011543_P001	Maize	extracellular	74.15	68.55
Zm00001d043932_P001	Maize	cytosol	71.43	66.04
EES03406	Sorghum	cytosol, plastid	74.15	64.88
GSMUA_Achr6P27020_001	Banana	cytosol	40.82	63.83
GSMUA_Achr3P15490_001	Banana	plastid	48.3	60.17
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	39.46	54.21
KRH21345	Soybean	plastid	46.26	51.13
KRH10949	Soybean	cytosol	45.58	50.38
KRH20376	Soybean	plastid	45.58	49.26
CDY15662	Canola	cytosol	42.86	49.22
Bra030545.1-P	Field mustard	cytosol	31.29	48.94
Os01t0241400-01	Rice	cytosol, plastid	44.22	47.79
CDX94626	Canola	cytosol	41.5	47.66
AT1G28480.1	Thale cress	cytosol	44.22	47.45
VIT_12s0028g03010.t01	Wine grape	cytosol	44.9	46.81
Bra030102.1-P	Field mustard	cytosol	42.86	46.32
CDY30815	Canola	cytosol	40.14	46.09
Solyc10g008150.1.1	Tomato	cytosol	34.01	45.87
VIT_10s0003g00390.t01	Wine grape	cytosol	46.26	45.33
Bra032911.1-P	Field mustard	cytosol	40.82	43.8
CDY34097	Canola	cytosol	40.82	43.8
Solyc10g008930.1.1	Tomato	cytosol	37.41	43.31
KRH26996	Soybean	mitochondrion	45.58	41.88
KRH25663	Soybean	cytosol, plastid	48.3	41.04
PGSC0003DMT400024317	Potato	plastid	41.5	40.67
Solyc07g053550.1.1	Tomato	cytosol	40.82	40.54
Os01t0194600-02	Rice	cytosol	34.01	40.0
KRH22331	Soybean	mitochondrion	46.94	39.66
KRH55866	Soybean	cytosol, plastid	46.26	39.53
PGSC0003DMT400056253	Potato	plastid	38.1	38.89
Os05t0198200-00	Rice	cytosol	36.05	38.41
CDY18190	Canola	plastid	37.41	35.48
Solyc02g077580.1.1	Tomato	cytosol, plastid	34.01	34.97
Bra015272.1-P	Field mustard	plastid	36.73	34.84
CDX89861	Canola	plastid	36.73	34.84
VIT_00s0199g00290.t01	Wine grape	extracellular	27.89	34.45
PGSC0003DMT400058776	Potato	plastid	40.82	33.33
Bra032540.1-P	Field mustard	plastid	34.01	32.47
CDY32516	Canola	plastid	34.01	32.47
CDY10096	Canola	plastid	34.01	32.47
AT1G03850.1	Thale cress	cytosol	31.97	29.56
CDY44992	Canola	cytosol	34.01	25.91

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	EntrezGene:4326324	EMBL:AK105335	ProteinID:BAD73655.1	ProteinID:BAD73683.1
ProteinID:BAF05726.1	ProteinID:BAS73597.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	InterPro:IPR002109	EnsemblPlantsGene:Os01g0667900	EnsemblPlants:Os01t0667900-01	PFAM:PF00462
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF199	UniProt:Q5QLR2	SUPFAM:SSF52833	TIGRFAMs:TIGR02189
InterPro:Thioredoxin-like_sf	UniParc:UPI00003D7657	RefSeq:XP_015624046.1	SEG:seg	:	:

Description

GLUTAREDOXIN 6CC-type glutaredoxin, Homeostatic regulation of nitrogen use, Hormone signaling (Os01t0667900-01)

Coordinates

chr1:-:27326050..27327025

Molecular Weight (calculated)

15145.7 Da

IEP (calculated)

7.513

GRAVY (calculated)

0.418

Length

147 amino acids

Sequence
(BLAST)

001: MYQAIPYSST RPWLRPEPAA SVVDVVKVET TTAVAGRGGE AEVVGEEEAA EVRRAVAESP VLVVGRRGCC LIHVVKRLLQ GLGVNPAVHE VAGEAALKGV
101: VPAGGEAAAL PAVFVGGKLL GGLDRLMAVH ISGELVPILK KAGALWL

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.