CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY05010
CDY14061
CDY24170
CDY25575
CDY34413
CDY36943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28480.1	CDY25575	AT1G64280.1	17397508
AT1G28480.1	CDY34413	AT1G64280.1	17397508
AT1G28480.1	CDY24170	AT3G47620.1	21798944
AT1G28480.1	CDY36943	AT3G47620.1	21798944
AT1G28480.1	CDY05010	AT5G06960.1	21798944
AT1G28480.1	CDY14061	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032911.1-P	Field mustard	cytosol	100.0	100.0
CDY30815	Canola	cytosol	86.86	92.97
AT1G28480.1	Thale cress	cytosol	78.1	78.1
CDX94626	Canola	cytosol	64.96	69.53
CDY15662	Canola	cytosol	58.39	62.5
TraesCS7D01G442400.1	Wheat	cytosol	45.99	56.76
TraesCS5A01G096900.1	Wheat	cytosol	37.96	54.74
GSMUA_Achr6P27020_001	Banana	cytosol	37.23	54.26
KRH21345	Soybean	plastid	49.63	51.13
GSMUA_Achr3P15490_001	Banana	plastid	42.34	49.15
KRH10949	Soybean	cytosol	47.45	48.87
TraesCS1B01G425500.1	Wheat	cytosol	48.18	48.53
TraesCS1D01G405200.1	Wheat	plastid	45.99	47.73
KRH20376	Soybean	plastid	45.99	46.32
TraesCS1A01G396900.1	Wheat	cytosol	48.18	45.52
TraesCS1D01G404800.1	Wheat	cytosol	48.18	45.52
TraesCS1B01G425200.1	Wheat	plastid	47.45	45.14
TraesCS6B01G132800.1	Wheat	cytosol	45.99	45.0
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	35.04	44.86
GSMUA_Achr10P...	Banana	cytosol	39.42	44.26
Zm00001d009568_P001	Maize	cytosol	43.07	44.03
TraesCS3B01G194500.1	Wheat	cytosol	35.77	43.75
OQU78423	Sorghum	cytosol, mitochondrion	46.72	42.95
TraesCS3D01G169500.1	Wheat	cytosol	35.04	42.86
TraesCS3A01G246700.1	Wheat	plastid	43.07	42.75
TraesCS3D01G244800.1	Wheat	plastid	43.07	42.75
TraesCS3A01G147400.1	Wheat	cytosol, plastid	43.8	42.55
Os01t0241400-01	Rice	cytosol, plastid	41.61	41.91
HORVU1Hr1G092260.1	Barley	mitochondrion	45.99	41.45
TraesCS2A01G232700.1	Wheat	cytosol	40.88	41.18
Zm00001d039011_P001	Maize	cytosol	43.07	40.97
TraesCS3B01G272600.1	Wheat	plastid	40.88	40.88
Os01t0667900-01	Rice	cytosol	43.8	40.82
GSMUA_Achr7P10990_001	Banana	cytosol	43.07	40.41
TraesCS4A01G254400.1	Wheat	plastid	40.88	40.29
HORVU3Hr1G061080.1	Barley	plastid	40.88	40.29
HORVU2Hr1G026710.1	Barley	cytosol	32.85	40.18
TraesCS4A01G254500.1	Wheat	plastid	43.07	40.14
TraesCS5A01G064100.1	Wheat	cytosol	40.15	39.86
TraesCS2A01G149100.1	Wheat	cytosol	31.39	38.39
TraesCS2B01G174000.1	Wheat	cytosol	31.39	38.39
HORVU2Hr1G057870.1	Barley	cytosol	45.26	38.27
Zm00001d043932_P001	Maize	cytosol	43.8	37.74
TraesCS1A01G397200.1	Wheat	plastid	45.26	37.58
Zm00001d011543_P001	Maize	extracellular	42.34	36.48
CDY28280	Canola	cytosol	37.96	36.11
HORVU3Hr1G065250.1	Barley	plastid	43.8	35.71
CDY10096	Canola	plastid	40.15	35.71
CDY32516	Canola	plastid	40.15	35.71
HORVU1Hr1G087630.3	Barley	mitochondrion	45.99	35.59
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	44.53	35.47
CDX68934	Canola	cytosol	36.5	34.72
CDX75319	Canola	cytosol	36.5	34.72
EES03406	Sorghum	cytosol, plastid	42.34	34.52
CDY18190	Canola	plastid	38.69	34.19
HORVU1Hr1G087600.1	Barley	plastid	46.72	33.86
CDY13515	Canola	cytosol	34.31	33.33
CDY45025	Canola	cytosol	35.04	33.33
CDX72386	Canola	cytosol	34.31	33.33
CDX89861	Canola	plastid	37.23	32.9
CDX70434	Canola	cytosol, plastid	33.58	32.86
CDX78456	Canola	plastid	32.85	32.14
HORVU3Hr1G032820.1	Barley	plastid	35.04	31.17
CDX97156	Canola	cytosol, plastid	31.39	30.71
CDX69718	Canola	cytosol, plastid	31.39	30.71
CDY44992	Canola	cytosol	40.15	28.5
TraesCS3A01G163500.1	Wheat	plastid	34.31	27.98
TraesCS2D01G153900.1	Wheat	cytosol	30.66	25.0

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:A0A078H924	UniProt:A0A078H924	EnsemblPlants:CDY34097	ProteinID:CDY34097
ProteinID:CDY34097.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00056025001	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin
InterPro:IPR002109	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF69	SUPFAM:SSF52833
TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI000254249E	:	:	:

Description

BnaA09g27230DBnaA09g27230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H924]

Coordinates

chrLK032328:+:286260..286673

Molecular Weight (calculated)

15018.6 Da

IEP (calculated)

5.711

GRAVY (calculated)

0.034

Length

137 amino acids

Sequence
(BLAST)

001: MQGTISCTRH YNMIPAAESP RPLPLKTEKT GENVRTLVEE NALIVIGRRG CCMCHVIKSL LLGLGVNPAV LEIDDQEKEE EVMSELERIG VEGGRERVKL
101: PAVYIGGRLF GGLDRVMATH ISGELVPILK DVGALWL

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.