CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011408.1-P	Field mustard	cytosol	93.75	94.41
CDX68934	Canola	cytosol	93.75	93.75
AT4G33040.1	Thale cress	cytosol	90.97	90.97
CDY28280	Canola	cytosol	88.89	88.89
CDY13515	Canola	cytosol	81.94	83.69
CDY45025	Canola	cytosol	83.33	83.33
CDX72386	Canola	cytosol	80.56	82.27
KRH15571	Soybean	cytosol	62.5	63.83
VIT_04s0008g01120.t01	Wine grape	cytosol	57.64	60.58
CDX70434	Canola	cytosol, plastid	58.33	60.0
KRH05438	Soybean	cytosol	60.42	59.18
KRH61512	Soybean	cytosol	55.56	58.82
CDX78456	Canola	plastid	56.94	58.57
CDX69718	Canola	cytosol, plastid	55.56	57.14
CDX97156	Canola	cytosol, plastid	55.56	57.14
Solyc08g062970.1.1	Tomato	cytosol	52.78	54.68
KRH52204	Soybean	cytosol	52.08	53.57
PGSC0003DMT400021236	Potato	cytosol	50.0	50.0
PGSC0003DMT400050646	Potato	cytosol	48.61	48.61
GSMUA_Achr7P13560_001	Banana	cytosol	36.81	47.32
Solyc11g069940.1.1	Tomato	cytosol	46.53	47.18
Zm00001d039468_P001	Maize	cytosol	38.19	45.83
Zm00001d008843_P001	Maize	cytosol	38.19	45.83
EES02308	Sorghum	cytosol	37.5	45.0
TraesCS3D01G107400.1	Wheat	cytosol	36.81	44.17
TraesCS3B01G123700.1	Wheat	cytosol	36.11	43.33
TraesCS3A01G105300.1	Wheat	cytosol	36.11	43.33
Zm00001d037757_P001	Maize	cytosol	35.42	41.8
Os01t0194600-02	Rice	cytosol	36.11	41.6
GSMUA_Achr5P06460_001	Banana	cytosol, mitochondrion	34.72	40.65
GSMUA_Achr10P...	Banana	mitochondrion	34.72	40.0
Os05t0198200-00	Rice	cytosol	36.11	37.68
CDX94626	Canola	cytosol	33.33	37.5
CDY30815	Canola	cytosol	32.64	36.72
CDY34097	Canola	cytosol	34.72	36.5
CDY15662	Canola	cytosol	31.94	35.94
EES17851	Sorghum	cytosol	36.11	35.62
CDY32516	Canola	plastid	33.33	31.17
CDY18190	Canola	plastid	33.33	30.97
CDY10096	Canola	plastid	32.64	30.52
CDX89861	Canola	plastid	32.64	30.32
CDY44992	Canola	cytosol	31.94	23.83

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:A0A078CGR1	EnsemblPlants:CDX75319	ProteinID:CDX75319	ProteinID:CDX75319.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00121195001	InterPro:GlrX-like_pln_2
InterPro:Glutaredoxin	InterPro:Glutaredoxin_subgr	InterPro:IPR002109	PFAM:PF00462	PRINTS:PR00160	PFscan:PS51354
PANTHER:PTHR10168	PANTHER:PTHR10168:SF56	SUPFAM:SSF52833	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EECE9C
SEG:seg	:	:	:	:	:

Description

BnaA01g03830D

Coordinates

chrLK031804:-:640227..640661

Molecular Weight (calculated)

15434.8 Da

IEP (calculated)

4.598

GRAVY (calculated)

0.328

Length

144 amino acids

Sequence
(BLAST)

001: MMQELGLERF SNDAVSLDLT PPSQTSSTSL SIDEEESSEA KIRRLITEHP VIIFSRSSCC MCHVMKRLLA TIGVIPTVIE LDDHEVSSLP LALGEEYSGV
101: GSGVVPPPAV FIGRECVGGL ESLVALHLSG HLVPKLVQVG ALWV

Best Arabidopsis Sequence Match ( AT4G33040.1 )
(BLAST)

001: MMQELGLQRF SNDVVRLDLT PPSQTSSTSL SIDEEESTEA KIRRLISEHP VIIFSRSSCC MCHVMKRLLA TIGVIPTVIE LDDHEVSSLP TALQDEYSGG
101: VSVVGPPPAV FIGRECVGGL ESLVALHLSG QLVPKLVQVG ALWV

Arabidopsis Description

GRXC6Glutaredoxin-C6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.