CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037028.1-P	Field mustard	cytosol	95.04	95.04
CDX72386	Canola	cytosol	94.33	94.33
CDX68934	Canola	cytosol	87.23	85.42
CDX75319	Canola	cytosol	83.69	81.94
CDY28280	Canola	cytosol	82.98	81.25
AT4G33040.1	Thale cress	cytosol	82.98	81.25
CDY45025	Canola	cytosol	81.56	79.86
KRH15571	Soybean	cytosol	61.7	61.7
VIT_04s0008g01120.t01	Wine grape	cytosol	57.45	59.12
CDX70434	Canola	cytosol, plastid	58.16	58.57
CDX78456	Canola	plastid	56.74	57.14
KRH05438	Soybean	cytosol	59.57	57.14
CDX97156	Canola	cytosol, plastid	56.03	56.43
CDX69718	Canola	cytosol, plastid	56.03	56.43
KRH61512	Soybean	cytosol	53.19	55.15
Solyc08g062970.1.1	Tomato	cytosol	53.19	53.96
KRH52204	Soybean	cytosol	49.65	50.0
PGSC0003DMT400021236	Potato	cytosol	48.94	47.92
PGSC0003DMT400050646	Potato	cytosol	48.23	47.22
Solyc11g069940.1.1	Tomato	cytosol	46.1	45.77
GSMUA_Achr7P13560_001	Banana	cytosol	36.17	45.54
Zm00001d008843_P001	Maize	cytosol	38.3	45.0
Zm00001d039468_P001	Maize	cytosol	38.3	45.0
EES02308	Sorghum	cytosol	37.59	44.17
TraesCS3D01G107400.1	Wheat	cytosol	36.88	43.33
TraesCS3B01G123700.1	Wheat	cytosol	36.17	42.5
TraesCS3A01G105300.1	Wheat	cytosol	36.17	42.5
GSMUA_Achr5P06460_001	Banana	cytosol, mitochondrion	35.46	40.65
GSMUA_Achr10P...	Banana	mitochondrion	35.46	40.0
Zm00001d037757_P001	Maize	cytosol	34.04	39.34
Os01t0194600-02	Rice	cytosol	34.75	39.2
Os05t0198200-00	Rice	cytosol	35.46	36.23
CDY30815	Canola	cytosol	31.21	34.38
CDX94626	Canola	cytosol	31.21	34.38
CDY34097	Canola	cytosol	33.33	34.31
EES17851	Sorghum	cytosol	35.46	34.25
CDY15662	Canola	cytosol	29.08	32.03
CDY32516	Canola	plastid	31.91	29.22
CDY18190	Canola	plastid	31.91	29.03
CDX89861	Canola	plastid	31.91	29.03
CDY10096	Canola	plastid	31.21	28.57
CDY44992	Canola	cytosol	30.5	22.28

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:A0A078FGG4	UniProt:A0A078FGG4	EnsemblPlants:CDY13515	ProteinID:CDY13515
ProteinID:CDY13515.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00077830001	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin
InterPro:IPR002109	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF56	SUPFAM:SSF52833
TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EE80AD	SEG:seg	:	:

Description

BnaA03g52330DBnaA03g52330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGG4]

Coordinates

chrLK032035:-:793695..794120

Molecular Weight (calculated)

15353.7 Da

IEP (calculated)

4.515

GRAVY (calculated)

0.303

Length

141 amino acids

Sequence
(BLAST)

001: MMQELSLECF SNEVVRLDLT PPSQTSPTSL SIDEEESSEA KIRRLISEHP VIIFSRSSCC MSHVMKRLLT TIGVVPTVIE LDDHEVSSLP MALEEEFSGG
101: VLPSPAVFIG RECVGGIESL VALHLSGHLV PKLVQVGALW V

Best Arabidopsis Sequence Match ( AT4G33040.1 )
(BLAST)

001: MMQELGLQRF SNDVVRLDLT PPSQTSSTSL SIDEEESTEA KIRRLISEHP VIIFSRSSCC MCHVMKRLLA TIGVIPTVIE LDDHEVSSLP TALQDEYSGG
101: VSVVGPPPAV FIGRECVGGL ESLVALHLSG QLVPKLVQVG ALWV

Arabidopsis Description

GRXC6Glutaredoxin-C6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.