CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	CDX90725	AT4G09570.1	19130088
AT1G03850.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10096	Canola	plastid	78.76	98.7
Bra032540.1-P	Field mustard	plastid	78.24	98.05
CDY32516	Canola	plastid	78.24	98.05
CDY18190	Canola	plastid	57.51	71.61
CDX89861	Canola	plastid	55.44	69.03
AT1G03850.1	Thale cress	cytosol	44.04	53.46
Solyc10g008150.1.1	Tomato	cytosol	25.91	45.87
GSMUA_Achr3P15490_001	Banana	plastid	27.98	45.76
GSMUA_Achr6P27020_001	Banana	cytosol	22.28	45.74
TraesCS5A01G096900.1	Wheat	cytosol	20.73	42.11
VIT_12s0028g03010.t01	Wine grape	cytosol	30.57	41.84
CDY30815	Canola	cytosol	26.94	40.62
TraesCS7D01G442400.1	Wheat	cytosol	23.32	40.54
PGSC0003DMT400056253	Potato	plastid	30.05	40.28
CDY34097	Canola	cytosol	28.5	40.15
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	21.76	39.25
Solyc07g053550.1.1	Tomato	cytosol	30.05	39.19
PGSC0003DMT400024317	Potato	plastid	30.05	38.67
GSMUA_Achr10P...	Banana	cytosol	24.35	38.52
CDX94626	Canola	cytosol	25.39	38.28
CDY15662	Canola	cytosol	25.39	38.28
TraesCS3B01G272600.1	Wheat	plastid	26.42	37.23
TraesCS1D01G405200.1	Wheat	plastid	25.39	37.12
TraesCS3D01G244800.1	Wheat	plastid	26.42	36.96
TraesCS3B01G194500.1	Wheat	cytosol	21.24	36.61
TraesCS3D01G169500.1	Wheat	cytosol	21.24	36.61
TraesCS3A01G246700.1	Wheat	plastid	25.91	36.23
Zm00001d039011_P001	Maize	cytosol	26.94	36.11
TraesCS1B01G425500.1	Wheat	cytosol	25.39	36.03
HORVU3Hr1G061080.1	Barley	plastid	25.91	35.97
HORVU2Hr1G026710.1	Barley	cytosol	20.73	35.71
Zm00001d009568_P001	Maize	cytosol	24.35	35.07
TraesCS2A01G149100.1	Wheat	cytosol	20.21	34.82
TraesCS2B01G174000.1	Wheat	cytosol	20.21	34.82
CDX70434	Canola	cytosol, plastid	24.87	34.29
CDX78456	Canola	plastid	24.87	34.29
TraesCS6B01G132800.1	Wheat	cytosol	24.87	34.29
GSMUA_Achr7P10990_001	Banana	cytosol	25.91	34.25
OQU78423	Sorghum	cytosol, mitochondrion	26.42	34.23
TraesCS1B01G425200.1	Wheat	plastid	25.39	34.03
Os01t0667900-01	Rice	cytosol	25.91	34.01
TraesCS1D01G404800.1	Wheat	cytosol	25.39	33.79
TraesCS1A01G396900.1	Wheat	cytosol	25.39	33.79
KRH26996	Soybean	mitochondrion	27.98	33.75
KRH55866	Soybean	cytosol, plastid	30.05	33.72
HORVU1Hr1G092260.1	Barley	mitochondrion	26.42	33.55
KRH25663	Soybean	cytosol, plastid	30.05	33.53
KRH22331	Soybean	mitochondrion	29.53	32.76
TraesCS5A01G064100.1	Wheat	cytosol	23.32	32.61
CDX75319	Canola	cytosol	23.83	31.94
Zm00001d011543_P001	Maize	extracellular	25.91	31.45
CDX69718	Canola	cytosol, plastid	22.8	31.43
CDX97156	Canola	cytosol, plastid	22.8	31.43
CDX68934	Canola	cytosol	23.32	31.25
TraesCS3A01G147400.1	Wheat	cytosol, plastid	22.8	31.21
TraesCS2A01G232700.1	Wheat	cytosol	21.76	30.88
Os01t0241400-01	Rice	cytosol, plastid	21.76	30.88
CDY28280	Canola	cytosol	22.8	30.56
CDY45025	Canola	cytosol	22.8	30.56
CDY13515	Canola	cytosol	22.28	30.5
CDX72386	Canola	cytosol	22.28	30.5
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	26.94	30.23
Zm00001d043932_P001	Maize	cytosol	24.87	30.19
HORVU3Hr1G032820.1	Barley	plastid	23.83	29.87
EES03406	Sorghum	cytosol, plastid	25.91	29.76
HORVU2Hr1G057870.1	Barley	cytosol	24.87	29.63
TraesCS4A01G254500.1	Wheat	plastid	22.28	29.25
TraesCS1A01G397200.1	Wheat	plastid	24.87	29.09
TraesCS4A01G254400.1	Wheat	plastid	20.73	28.78
HORVU1Hr1G087630.3	Barley	mitochondrion	25.39	27.68
HORVU1Hr1G087600.1	Barley	plastid	26.94	27.51
HORVU3Hr1G065250.1	Barley	plastid	23.32	26.79
TraesCS3A01G163500.1	Wheat	plastid	21.76	25.0
TraesCS2D01G153900.1	Wheat	cytosol	21.76	25.0

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:A0A078I4P7	UniProt:A0A078I4P7	EnsemblPlants:CDY44992	ProteinID:CDY44992
ProteinID:CDY44992.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00081186001	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin
InterPro:IPR002109	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF111	SUPFAM:SSF52833
TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EE1544	SEG:seg	:	:

Description

BnaCnng12220DBnaCnng12220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4P7]

Coordinates

chrLK032608:-:141153..141872

Molecular Weight (calculated)

21390.2 Da

IEP (calculated)

9.173

GRAVY (calculated)

-0.074

Length

193 amino acids

Sequence
(BLAST)

001: MLCVTYGFRY VRVCTCRDRV FCRLLKWVKD CCHGLIQTNI QKAVRPYESS WTKTIPGNSI FRPENEDKPS SSLSWLTSSP QKPSSLSIKK PNNVLVMENA
101: AVVFARKGCC MGHVAKRLLL THGVNPLVVE IDEGDNNGDN IIMSELGNNV ISKEKLPVMF IGGKLFGGLE NLMAAHINGD LGPTLRRAGA LWL

Best Arabidopsis Sequence Match ( AT1G03850.2 )
(BLAST)

001: MQKAIRPYES PWTKTVPGNS IFLLKNEDKP SSSSSSLSWL TSGSPKPTSI SNKRSSNLVV MENAVVVFAR RGCCLGHVAK RLLLTHGVNP VVVEIGEEDN
101: NNYDNIVSDK EKLPMMYIGG KLFGGLENLM AAHINGDLVP TLRQAGALWL

Arabidopsis Description

Glutaredoxin family protein [Source:TAIR;Acc:AT1G03850]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.