CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	KRG91803	AT4G09570.1	19130088
AT1G03850.1	KRH34983	AT4G09570.1	19130088
AT1G03850.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55866	Soybean	cytosol, plastid	75.72	76.16
KRH26996	Soybean	mitochondrion	54.34	58.75
Bra030545.1-P	Field mustard	cytosol	31.21	57.45
VIT_12s0028g03010.t01	Wine grape	cytosol	46.24	56.74
Solyc10g008150.1.1	Tomato	cytosol	34.68	55.05
TraesCS7D01G442400.1	Wheat	cytosol	35.26	54.95
KRH10949	Soybean	cytosol	42.2	54.89
TraesCS5A01G096900.1	Wheat	cytosol	30.06	54.74
KRH22331	Soybean	mitochondrion	54.91	54.6
KRH21345	Soybean	plastid	39.88	51.88
GSMUA_Achr6P27020_001	Banana	cytosol	27.75	51.06
Solyc07g053550.1.1	Tomato	cytosol	43.35	50.68
PGSC0003DMT400024317	Potato	plastid	43.93	50.67
TraesCS1D01G405200.1	Wheat	plastid	38.15	50.0
KRH20376	Soybean	plastid	39.31	50.0
HORVU3Hr1G061080.1	Barley	plastid	39.88	49.64
PGSC0003DMT400056253	Potato	plastid	41.04	49.31
TraesCS3D01G244800.1	Wheat	plastid	39.31	49.28
TraesCS1B01G425500.1	Wheat	cytosol	38.73	49.26
GSMUA_Achr3P15490_001	Banana	plastid	33.53	49.15
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	30.06	48.6
TraesCS3A01G246700.1	Wheat	plastid	38.73	48.55
Os01t0667900-01	Rice	cytosol	41.04	48.3
TraesCS3B01G272600.1	Wheat	plastid	38.15	48.18
Zm00001d009568_P001	Maize	cytosol	36.42	47.01
GSMUA_Achr10P...	Banana	cytosol	32.95	46.72
TraesCS1B01G425200.1	Wheat	plastid	38.15	45.83
TraesCS3B01G194500.1	Wheat	cytosol	29.48	45.54
TraesCS1D01G404800.1	Wheat	cytosol	38.15	45.52
TraesCS1A01G396900.1	Wheat	cytosol	38.15	45.52
OQU78423	Sorghum	cytosol, mitochondrion	38.73	44.97
TraesCS3D01G169500.1	Wheat	cytosol	28.9	44.64
Zm00001d011543_P001	Maize	extracellular	40.46	44.03
TraesCS4A01G254400.1	Wheat	plastid	35.26	43.88
Zm00001d039011_P001	Maize	cytosol	36.42	43.75
TraesCS6B01G132800.1	Wheat	cytosol	35.26	43.57
TraesCS5A01G064100.1	Wheat	cytosol	34.68	43.48
Zm00001d043932_P001	Maize	cytosol	39.88	43.4
TraesCS3A01G147400.1	Wheat	cytosol, plastid	35.26	43.26
EES03406	Sorghum	cytosol, plastid	41.62	42.86
HORVU1Hr1G092260.1	Barley	mitochondrion	37.57	42.76
TraesCS2A01G232700.1	Wheat	cytosol	33.53	42.65
CDY18190	Canola	plastid	37.57	41.94
Os01t0241400-01	Rice	cytosol, plastid	32.95	41.91
TraesCS4A01G254500.1	Wheat	plastid	35.26	41.5
CDX89861	Canola	plastid	36.99	41.29
Bra015272.1-P	Field mustard	plastid	36.99	41.29
GSMUA_Achr7P10990_001	Banana	cytosol	34.68	41.1
TraesCS1A01G397200.1	Wheat	plastid	38.15	40.0
HORVU2Hr1G026710.1	Barley	cytosol	25.43	39.29
TraesCS2A01G149100.1	Wheat	cytosol	24.86	38.39
TraesCS2B01G174000.1	Wheat	cytosol	24.86	38.39
CDY32516	Canola	plastid	33.53	37.66
CDY10096	Canola	plastid	33.53	37.66
Bra032540.1-P	Field mustard	plastid	33.53	37.66
HORVU2Hr1G057870.1	Barley	cytosol	35.26	37.65
HORVU1Hr1G087630.3	Barley	mitochondrion	36.42	35.59
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	34.68	34.88
HORVU3Hr1G065250.1	Barley	plastid	33.53	34.52
HORVU1Hr1G087600.1	Barley	plastid	37.57	34.39
KRH15571	Soybean	cytosol	27.17	33.33
HORVU3Hr1G032820.1	Barley	plastid	29.48	33.12
KRH05438	Soybean	cytosol	27.17	31.97
KRH61512	Soybean	cytosol	23.7	30.15
CDY44992	Canola	cytosol	33.53	30.05
AT1G03850.1	Thale cress	cytosol	27.17	29.56
TraesCS3A01G163500.1	Wheat	plastid	28.32	29.17
KRH52204	Soybean	cytosol	20.81	25.71
TraesCS2D01G153900.1	Wheat	cytosol	24.86	25.6

Protein Annotations

EntrezGene:100306716	MapMan:18.8.2	Gene3D:3.40.30.10	EMBL:ACUP02007308	EMBL:BT090954	UniProt:C6T0K0
EnsemblPlantsGene:GLYMA_12G119200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	InterPro:IPR002109
EnsemblPlants:KRH25663	ProteinID:KRH25663	ProteinID:KRH25663.1	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168
PANTHER:PTHR10168:SF111	SUPFAM:SSF52833	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0001B15457	:

Description

hypothetical protein

Coordinates

chr12:-:12617704..12618795

Molecular Weight (calculated)

18739.7 Da

IEP (calculated)

6.229

GRAVY (calculated)

0.120

Length

173 amino acids

Sequence
(BLAST)

001: MQQAIPYRSW QPLITPTNAN TTHFTISPHT LVTFSTVSTT ELSLKDDIGS EPNNNIHNSD NPFFVSSKMV PNMVLESAII VFARRGCCMS HVVKRLLLGL
101: GVNPAVHEVE ESDEVGVVRE LEAIVGANNG GNKMQFPAVF IGGKLFGGLD KVMATHISGE LVPILKEAGA LWL

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.