Factsheet for Zm00001d011543_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d008225_P001
Zm00001d010658_P001
Zm00001d012553_P003
Zm00001d018045_P001
Zm00001d022542_P002
Zm00001d023560_P002
Zm00001d028936_P001
Zm00001d037221_P001
Zm00001d039469_P001
Zm00001d043153_P001
Zm00001d044836_P001
Zm00001d052256_P001
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT1G03850.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT1G03850.1	Zm00001d053016_P002	AT4G09570.1	19130088
AT1G28480.1	Zm00001d039469_P001	AT1G64280.1	17397508
AT1G28480.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT1G28480.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT1G28480.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT1G28480.1	Zm00001d052256_P001	AT3G47620.1	21798944
AT1G28480.1	Zm00001d008225_P001	AT5G06960.1	21798944
AT1G28480.1	Zm00001d010658_P001	AT5G06960.1	21798944
AT1G28480.1	Zm00001d012553_P003	AT5G06960.1	21798944
AT1G28480.1	Zm00001d022542_P002	AT5G06960.1	21798944
AT1G28480.1	Zm00001d028936_P001	AT5G06960.1	21798944
AT1G28480.1	Zm00001d043153_P001	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043932_P001	Maize	cytosol	80.5	80.5
TraesCS3A01G246700.1	Wheat	plastid	66.04	76.09
TraesCS3D01G244800.1	Wheat	plastid	64.78	74.64
Os01t0667900-01	Rice	cytosol	68.55	74.15
TraesCS3B01G272600.1	Wheat	plastid	63.52	73.72
HORVU3Hr1G061080.1	Barley	plastid	64.15	73.38
Zm00001d039011_P001	Maize	cytosol	57.86	63.89
GSMUA_Achr6P27020_001	Banana	cytosol	37.74	63.83
Zm00001d009568_P001	Maize	cytosol	50.31	59.7
GSMUA_Achr3P15490_001	Banana	plastid	43.4	58.47
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	36.48	54.21
KRH10949	Soybean	cytosol	44.65	53.38
Bra030545.1-P	Field mustard	cytosol	29.56	50.0
KRH21345	Soybean	plastid	41.51	49.62
KRH20376	Soybean	plastid	42.14	49.26
VIT_12s0028g03010.t01	Wine grape	cytosol	42.77	48.23
CDY15662	Canola	cytosol	38.36	47.66
CDX94626	Canola	cytosol	37.74	46.88
Solyc10g008150.1.1	Tomato	cytosol	32.08	46.79
VIT_10s0003g00390.t01	Wine grape	cytosol	43.4	46.0
Bra030102.1-P	Field mustard	cytosol	38.99	45.59
AT1G28480.1	Thale cress	cytosol	38.99	45.26
KRH26996	Soybean	mitochondrion	44.65	44.38
CDY30815	Canola	cytosol	35.22	43.75
PGSC0003DMT400024317	Potato	plastid	40.25	42.67
Solyc10g008930.1.1	Tomato	cytosol	33.96	42.52
Bra032911.1-P	Field mustard	cytosol	36.48	42.34
CDY34097	Canola	cytosol	36.48	42.34
KRH22331	Soybean	mitochondrion	45.28	41.38
Zm00001d037757_P001	Maize	cytosol	31.45	40.98
Solyc07g053550.1.1	Tomato	cytosol	37.74	40.54
KRH25663	Soybean	cytosol, plastid	44.03	40.46
PGSC0003DMT400056253	Potato	plastid	35.85	39.58
KRH55866	Soybean	cytosol, plastid	42.14	38.95
Zm00001d008843_P001	Maize	cytosol	28.93	38.33
Zm00001d039468_P001	Maize	cytosol	28.3	37.5
VIT_00s0199g00290.t01	Wine grape	extracellular	26.42	35.29
Solyc02g077580.1.1	Tomato	cytosol, plastid	30.82	34.27
CDY18190	Canola	plastid	32.08	32.9
CDX89861	Canola	plastid	32.08	32.9
CDY32516	Canola	plastid	31.45	32.47
CDY10096	Canola	plastid	31.45	32.47
Bra032540.1-P	Field mustard	plastid	31.45	32.47
Bra015272.1-P	Field mustard	plastid	31.45	32.26
PGSC0003DMT400058776	Potato	plastid	34.59	30.56
AT1G03850.1	Thale cress	cytosol	29.56	29.56
CDY44992	Canola	cytosol	31.45	25.91

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	ProteinID:AQK97158.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2
InterPro:Glutaredoxin	InterPro:IPR002109	UniProt:K7W064	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168
PANTHER:PTHR10168:SF199	SUPFAM:SSF52833	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0001CAB993	EnsemblPlantsGene:Zm00001d011543
EnsemblPlants:Zm00001d011543_P001	EnsemblPlants:Zm00001d011543_T001	SEG:seg	:	:	:

Description

Grx_I1-glutaredoxin subgroup III

Coordinates

chr8:-:154129779..154130258

Molecular Weight (calculated)

15929.3 Da

IEP (calculated)

5.208

GRAVY (calculated)

0.357

Length

159 amino acids

Sequence
(BLAST)

001: MYQAIPYSSA RPWLMPAGEA AAVVAVKPEP EPAAAATVAE ERARADAAGG TDDDGDGGRA EVGRAVAESP VLVVGRRGCC LSHVVKRLLQ GLGVNPAVHE
101: VADEAALAGV VPAGAEAAAA ALPAVFVGGK LLGGLDRLMA VHISGELVPI LKKAGALWL

Best Arabidopsis Sequence Match ( AT1G03850.2 )
(BLAST)

001: MQKAIRPYES PWTKTVPGNS IFLLKNEDKP SSSSSSLSWL TSGSPKPTSI SNKRSSNLVV MENAVVVFAR RGCCLGHVAK RLLLTHGVNP VVVEIGEEDN
101: NNYDNIVSDK EKLPMMYIGG KLFGGLENLM AAHINGDLVP TLRQAGALWL

Arabidopsis Description

Glutaredoxin family protein [Source:TAIR;Acc:AT1G03850]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.