CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
vacuole 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	KRG91803	AT4G09570.1	19130088
AT1G03850.1	KRH34983	AT4G09570.1	19130088
AT1G03850.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25663	Soybean	cytosol, plastid	76.16	75.72
KRH26996	Soybean	mitochondrion	53.49	57.5
Solyc10g008150.1.1	Tomato	cytosol	36.05	56.88
KRH10949	Soybean	cytosol	43.6	56.39
VIT_12s0028g03010.t01	Wine grape	cytosol	45.93	56.03
Bra030545.1-P	Field mustard	cytosol	30.23	55.32
KRH22331	Soybean	mitochondrion	55.23	54.6
TraesCS7D01G442400.1	Wheat	cytosol	34.3	53.15
PGSC0003DMT400056253	Potato	plastid	44.19	52.78
TraesCS5A01G096900.1	Wheat	cytosol	28.49	51.58
Solyc07g053550.1.1	Tomato	cytosol	44.19	51.35
KRH21345	Soybean	plastid	39.53	51.13
PGSC0003DMT400024317	Potato	plastid	44.19	50.67
GSMUA_Achr6P27020_001	Banana	cytosol	27.33	50.0
KRH20376	Soybean	plastid	38.95	49.26
GSMUA_Achr3P15490_001	Banana	plastid	33.72	49.15
HORVU3Hr1G061080.1	Barley	plastid	39.53	48.92
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	30.23	48.6
TraesCS1B01G425500.1	Wheat	cytosol	38.37	48.53
TraesCS1D01G405200.1	Wheat	plastid	37.21	48.48
TraesCS3A01G246700.1	Wheat	plastid	38.37	47.83
TraesCS3D01G244800.1	Wheat	plastid	38.37	47.83
TraesCS3B01G272600.1	Wheat	plastid	37.21	46.72
Zm00001d009568_P001	Maize	cytosol	36.05	46.27
Os01t0667900-01	Rice	cytosol	39.53	46.26
GSMUA_Achr10P...	Banana	cytosol	32.56	45.9
TraesCS1B01G425200.1	Wheat	plastid	38.37	45.83
TraesCS1D01G404800.1	Wheat	cytosol	38.37	45.52
TraesCS1A01G396900.1	Wheat	cytosol	37.79	44.83
TraesCS3B01G194500.1	Wheat	cytosol	29.07	44.64
Zm00001d039011_P001	Maize	cytosol	37.21	44.44
TraesCS3D01G169500.1	Wheat	cytosol	28.49	43.75
OQU78423	Sorghum	cytosol, mitochondrion	37.79	43.62
TraesCS5A01G064100.1	Wheat	cytosol	34.88	43.48
Zm00001d043932_P001	Maize	cytosol	39.53	42.77
TraesCS6B01G132800.1	Wheat	cytosol	34.3	42.14
Zm00001d011543_P001	Maize	extracellular	38.95	42.14
CDY18190	Canola	plastid	37.79	41.94
CDX89861	Canola	plastid	37.79	41.94
Os01t0241400-01	Rice	cytosol, plastid	33.14	41.91
TraesCS2A01G232700.1	Wheat	cytosol	33.14	41.91
TraesCS3A01G147400.1	Wheat	cytosol, plastid	34.3	41.84
TraesCS4A01G254400.1	Wheat	plastid	33.72	41.73
HORVU1Hr1G092260.1	Barley	mitochondrion	36.63	41.45
Bra015272.1-P	Field mustard	plastid	37.21	41.29
GSMUA_Achr7P10990_001	Banana	cytosol	34.88	41.1
EES03406	Sorghum	cytosol, plastid	40.12	41.07
TraesCS4A01G254500.1	Wheat	plastid	34.88	40.82
TraesCS1A01G397200.1	Wheat	plastid	37.79	39.39
CDY10096	Canola	plastid	33.72	37.66
CDY32516	Canola	plastid	33.72	37.66
Bra032540.1-P	Field mustard	plastid	33.72	37.66
HORVU2Hr1G026710.1	Barley	cytosol	24.42	37.5
TraesCS2B01G174000.1	Wheat	cytosol	23.84	36.61
HORVU2Hr1G057870.1	Barley	cytosol	34.3	36.42
TraesCS2A01G149100.1	Wheat	cytosol	23.26	35.71
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	35.47	35.47
HORVU1Hr1G087630.3	Barley	mitochondrion	36.05	35.03
HORVU3Hr1G065250.1	Barley	plastid	33.72	34.52
HORVU1Hr1G087600.1	Barley	plastid	36.63	33.33
HORVU3Hr1G032820.1	Barley	plastid	29.07	32.47
AT1G03850.1	Thale cress	cytosol	27.91	30.19
CDY44992	Canola	cytosol	33.72	30.05
KRH61512	Soybean	cytosol	23.26	29.41
TraesCS3A01G163500.1	Wheat	plastid	28.49	29.17
KRH15571	Soybean	cytosol	23.84	29.08
KRH05438	Soybean	cytosol	23.84	27.89
KRH52204	Soybean	cytosol	20.93	25.71
TraesCS2D01G153900.1	Wheat	cytosol	23.84	24.4

Protein Annotations

EntrezGene:100527118	MapMan:18.8.2	Gene3D:3.40.30.10	EMBL:ACUP02004063	EMBL:BT091937	UniProt:C6T3C7
EnsemblPlantsGene:GLYMA_06G287000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	InterPro:IPR002109
EnsemblPlants:KRH55866	ProteinID:KRH55866	ProteinID:KRH55866.1	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168
PANTHER:PTHR10168:SF111	SUPFAM:SSF52833	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0001B153DD	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:47584525..47585560

Molecular Weight (calculated)

18552.4 Da

IEP (calculated)

6.883

GRAVY (calculated)

0.057

Length

172 amino acids

Sequence
(BLAST)

001: MQQAIPYRSW QPLITHTSTT TTTHFTISPH TLTYSTVSPT GLSPKDNIGL EPNNNNNGNS HFFISSKMVP NMVLENAIIV FASRGCCMSH VVKRLLLGLG
101: ANPAVHEVEE SDEVGVVREL EAIVGANNGG NKMQFPAVFI GGKLFGGLDR VMATHISGEL IPILKEAGAL WL

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.