CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93068
KRH03466
KRH13334
KRH20680
KRH36324
KRH37416
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28480.1	KRH37416	AT1G64280.1	17397508
AT1G28480.1	KRH03466	AT3G47620.1	21798944
AT1G28480.1	KRH54542	AT3G47620.1	21798944
AT1G28480.1	KRH56919	AT3G47620.1	21798944
AT1G28480.1	KRH63357	AT3G47620.1	21798944
AT1G28480.1	KRG93068	AT5G06960.1	21798944
AT1G28480.1	KRH13334	AT5G06960.1	21798944
AT1G28480.1	KRH20680	AT5G06960.1	21798944
AT1G28480.1	KRH36324	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21345	Soybean	plastid	75.94	75.94
KRH20376	Soybean	plastid	59.4	58.09
TraesCS5A01G096900.1	Wheat	cytosol	39.85	55.79
TraesCS7D01G442400.1	Wheat	cytosol	45.86	54.95
GSMUA_Achr6P27020_001	Banana	cytosol	37.59	53.19
HORVU3Hr1G061080.1	Barley	plastid	54.14	51.8
TraesCS1D01G405200.1	Wheat	plastid	51.13	51.52
TraesCS3A01G246700.1	Wheat	plastid	51.88	50.0
TraesCS3D01G244800.1	Wheat	plastid	51.88	50.0
TraesCS1B01G425500.1	Wheat	cytosol	51.13	50.0
Bra030102.1-P	Field mustard	cytosol	50.38	49.26
CDY30815	Canola	cytosol	47.37	49.22
TraesCS3B01G272600.1	Wheat	plastid	50.38	48.91
KRH26996	Soybean	mitochondrion	58.65	48.75
AT1G28480.1	Thale cress	cytosol	49.62	48.18
TraesCS1B01G425200.1	Wheat	plastid	51.88	47.92
CDX94626	Canola	cytosol	45.86	47.66
CDY15662	Canola	cytosol	45.86	47.66
TraesCS1D01G404800.1	Wheat	cytosol	51.88	47.59
TraesCS1A01G396900.1	Wheat	cytosol	51.88	47.59
GSMUA_Achr10P...	Banana	cytosol	43.61	47.54
CDY34097	Canola	cytosol	48.87	47.45
Bra032911.1-P	Field mustard	cytosol	48.87	47.45
GSMUA_Achr3P15490_001	Banana	plastid	41.35	46.61
Zm00001d009568_P001	Maize	cytosol	46.62	46.27
Os01t0667900-01	Rice	cytosol	50.38	45.58
HORVU1Hr1G092260.1	Barley	mitochondrion	51.88	45.39
TraesCS3A01G147400.1	Wheat	cytosol, plastid	48.12	45.39
TraesCS5A01G064100.1	Wheat	cytosol	46.62	44.93
Zm00001d011543_P001	Maize	extracellular	53.38	44.65
TraesCS3B01G194500.1	Wheat	cytosol	37.59	44.64
TraesCS6B01G132800.1	Wheat	cytosol	46.62	44.29
KRH22331	Soybean	mitochondrion	57.89	44.25
TraesCS2A01G232700.1	Wheat	cytosol	45.11	44.12
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	35.34	43.93
TraesCS4A01G254400.1	Wheat	plastid	45.86	43.88
TraesCS3D01G169500.1	Wheat	cytosol	36.84	43.75
Zm00001d039011_P001	Maize	cytosol	47.37	43.75
OQU78423	Sorghum	cytosol, mitochondrion	48.87	43.62
KRH55866	Soybean	cytosol, plastid	56.39	43.6
KRH25663	Soybean	cytosol, plastid	54.89	42.2
Zm00001d043932_P001	Maize	cytosol	50.38	42.14
HORVU2Hr1G057870.1	Barley	cytosol	50.38	41.36
GSMUA_Achr7P10990_001	Banana	cytosol	45.11	41.1
TraesCS4A01G254500.1	Wheat	plastid	44.36	40.14
EES03406	Sorghum	cytosol, plastid	50.38	39.88
TraesCS1A01G397200.1	Wheat	plastid	48.87	39.39
HORVU2Hr1G026710.1	Barley	cytosol	33.08	39.29
Os01t0241400-01	Rice	cytosol, plastid	39.1	38.24
TraesCS2B01G174000.1	Wheat	cytosol	30.83	36.61
HORVU1Hr1G087600.1	Barley	plastid	51.88	36.51
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	46.62	36.05
TraesCS2A01G149100.1	Wheat	cytosol	30.08	35.71
HORVU1Hr1G087630.3	Barley	mitochondrion	47.37	35.59
HORVU3Hr1G065250.1	Barley	plastid	44.36	35.12
HORVU3Hr1G032820.1	Barley	plastid	40.6	35.06
KRH61512	Soybean	cytosol	33.08	32.35
KRH15571	Soybean	cytosol	33.08	31.21
KRH52204	Soybean	cytosol	30.83	29.29
KRH05438	Soybean	cytosol	32.33	29.25
TraesCS3A01G163500.1	Wheat	plastid	36.84	29.17
TraesCS2D01G153900.1	Wheat	cytosol	33.08	26.19

Protein Annotations

EntrezGene:100809924	MapMan:18.8.2	Gene3D:3.40.30.10	EMBL:ACUP02009167	EnsemblPlantsGene:GLYMA_15G078600	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	UniProt:I1MEN6	InterPro:IPR002109	EnsemblPlants:KRH10949
ProteinID:KRH10949	ProteinID:KRH10949.1	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF69
SUPFAM:SSF52833	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0001BA93A3	:	:

Description

hypothetical protein

Coordinates

chr15:-:6035650..6037148

Molecular Weight (calculated)

14207.5 Da

IEP (calculated)

6.779

GRAVY (calculated)

0.329

Length

133 amino acids

Sequence
(BLAST)

001: MHQAIPYRTS ILTGTCDMAH AGGIKEFNLA NPSNVAAMVS ESAVVIIGKR GCCMCHVVKR LLQGLGVNPP VYEVDEDHEA AVARHLFPQG AETVQFPAVF
101: LAGKLFGGLE RVMATHISGE LIPILKDAGA LWL

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.