CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15571	Soybean	cytosol	70.59	68.09
KRH05438	Soybean	cytosol	72.06	66.67
KRH52204	Soybean	cytosol	68.38	66.43
VIT_04s0008g01120.t01	Wine grape	cytosol	60.29	59.85
CDX75319	Canola	cytosol	58.82	55.56
AT4G33040.1	Thale cress	cytosol	58.82	55.56
Bra011408.1-P	Field mustard	cytosol	58.09	55.24
CDX68934	Canola	cytosol	57.35	54.17
CDY28280	Canola	cytosol	57.35	54.17
Bra037028.1-P	Field mustard	cytosol	55.88	53.9
Solyc08g062970.1.1	Tomato	cytosol	54.41	53.24
CDX72386	Canola	cytosol	55.15	53.19
CDY13515	Canola	cytosol	55.15	53.19
CDY45025	Canola	cytosol	54.41	51.39
Bra034545.1-P	Field mustard	cytosol	53.68	50.69
PGSC0003DMT400021236	Potato	cytosol	52.94	50.0
Solyc11g069940.1.1	Tomato	cytosol	50.0	47.89
PGSC0003DMT400050646	Potato	cytosol	47.06	44.44
GSMUA_Achr7P13560_001	Banana	cytosol	35.29	42.86
Zm00001d039468_P001	Maize	cytosol	37.5	42.5
TraesCS3D01G107400.1	Wheat	cytosol	37.5	42.5
Zm00001d008843_P001	Maize	cytosol	37.5	42.5
TraesCS3B01G123700.1	Wheat	cytosol	37.5	42.5
TraesCS3A01G105300.1	Wheat	cytosol	37.5	42.5
Zm00001d037757_P001	Maize	cytosol	37.5	41.8
EES02308	Sorghum	cytosol	36.76	41.67
GSMUA_Achr10P...	Banana	mitochondrion	36.03	39.2
Os05t0198200-00	Rice	cytosol	39.71	39.13
Os01t0194600-02	Rice	cytosol	35.29	38.4
GSMUA_Achr5P06460_001	Banana	cytosol, mitochondrion	34.56	38.21
EES17851	Sorghum	cytosol	38.24	35.62
KRH10949	Soybean	cytosol	32.35	33.08
KRH20376	Soybean	plastid	32.35	32.35
KRH21345	Soybean	plastid	30.88	31.58
KRH26996	Soybean	mitochondrion	28.68	24.38
KRH25663	Soybean	cytosol, plastid	30.15	23.7
KRH55866	Soybean	cytosol, plastid	29.41	23.26
KRH22331	Soybean	mitochondrion	29.41	22.99

Protein Annotations

EntrezGene:100791969	MapMan:18.8.2	Gene3D:3.40.30.10	EMBL:ACUP02002171	EnsemblPlantsGene:GLYMA_04G051900	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	UniProt:I1JTX4	InterPro:IPR002109	EnsemblPlants:KRH61512
ProteinID:KRH61512	ProteinID:KRH61512.1	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF178
SUPFAM:SSF52833	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI000233A7E3	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:4204292..4205760

Molecular Weight (calculated)

14375.6 Da

IEP (calculated)

4.799

GRAVY (calculated)

0.362

Length

136 amino acids

Sequence
(BLAST)

001: MQGIGIGCCS NDVVGQLELS PTMSNSSSSL SMELDESPES RIQRLISEHP VIIFTRSSCC MCHVMKKLLA TIGVHPTVIE LDDHEIASLP LPDTTAPAAF
101: IGGTCIGGLE SLVALHVSGH LIPKLVQVGA LWNLGE

Best Arabidopsis Sequence Match ( AT4G33040.1 )
(BLAST)

001: MMQELGLQRF SNDVVRLDLT PPSQTSSTSL SIDEEESTEA KIRRLISEHP VIIFSRSSCC MCHVMKRLLA TIGVIPTVIE LDDHEVSSLP TALQDEYSGG
101: VSVVGPPPAV FIGRECVGGL ESLVALHLSG QLVPKLVQVG ALWV

Arabidopsis Description

GRXC6Glutaredoxin-C6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.