CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
extracellular 1
mitochondrion 5
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	KRG91803	AT4G09570.1	19130088
AT1G03850.1	KRH34983	AT4G09570.1	19130088
AT1G03850.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22331	Soybean	mitochondrion	81.25	74.71
VIT_12s0028g03010.t01	Wine grape	cytosol	52.5	59.57
KRH10949	Soybean	cytosol	48.75	58.65
KRH21345	Soybean	plastid	48.75	58.65
Solyc10g008150.1.1	Tomato	cytosol	38.12	55.96
TraesCS7D01G442400.1	Wheat	cytosol	38.75	55.86
TraesCS5A01G096900.1	Wheat	cytosol	32.5	54.74
KRH25663	Soybean	cytosol, plastid	58.75	54.34
Bra030545.1-P	Field mustard	cytosol	31.88	54.26
GSMUA_Achr6P27020_001	Banana	cytosol	31.88	54.26
KRH55866	Soybean	cytosol, plastid	57.5	53.49
GSMUA_Achr3P15490_001	Banana	plastid	38.75	52.54
KRH20376	Soybean	plastid	43.75	51.47
Solyc07g053550.1.1	Tomato	cytosol	47.5	51.35
TraesCS1D01G405200.1	Wheat	plastid	41.88	50.76
PGSC0003DMT400024317	Potato	plastid	47.5	50.67
HORVU3Hr1G061080.1	Barley	plastid	43.75	50.36
TraesCS3B01G272600.1	Wheat	plastid	42.5	49.63
PGSC0003DMT400056253	Potato	plastid	44.38	49.31
TraesCS3D01G244800.1	Wheat	plastid	42.5	49.28
TraesCS3A01G246700.1	Wheat	plastid	42.5	49.28
Zm00001d009568_P001	Maize	cytosol	41.25	49.25
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	32.5	48.6
TraesCS1B01G425500.1	Wheat	cytosol	41.25	48.53
GSMUA_Achr10P...	Banana	cytosol	36.88	48.36
TraesCS1B01G425200.1	Wheat	plastid	42.5	47.22
TraesCS1A01G396900.1	Wheat	cytosol	42.5	46.9
TraesCS1D01G404800.1	Wheat	cytosol	42.5	46.9
TraesCS3B01G194500.1	Wheat	cytosol	32.5	46.43
TraesCS4A01G254400.1	Wheat	plastid	40.0	46.04
TraesCS6B01G132800.1	Wheat	cytosol	40.0	45.71
OQU78423	Sorghum	cytosol, mitochondrion	42.5	45.64
Os01t0667900-01	Rice	cytosol	41.88	45.58
TraesCS3D01G169500.1	Wheat	cytosol	31.88	45.54
TraesCS3A01G147400.1	Wheat	cytosol, plastid	39.38	44.68
Zm00001d011543_P001	Maize	extracellular	44.38	44.65
HORVU2Hr1G026710.1	Barley	cytosol	31.25	44.64
GSMUA_Achr7P10990_001	Banana	cytosol	40.62	44.52
Zm00001d039011_P001	Maize	cytosol	40.0	44.44
TraesCS4A01G254500.1	Wheat	plastid	40.62	44.22
TraesCS5A01G064100.1	Wheat	cytosol	38.12	44.2
HORVU1Hr1G092260.1	Barley	mitochondrion	41.88	44.08
Zm00001d043932_P001	Maize	cytosol	43.75	44.03
TraesCS2A01G232700.1	Wheat	cytosol	36.88	43.38
TraesCS2B01G174000.1	Wheat	cytosol	30.0	42.86
Os01t0241400-01	Rice	cytosol, plastid	35.0	41.18
EES03406	Sorghum	cytosol, plastid	43.12	41.07
TraesCS2A01G149100.1	Wheat	cytosol	28.75	41.07
TraesCS1A01G397200.1	Wheat	plastid	41.25	40.0
HORVU2Hr1G057870.1	Barley	cytosol	40.0	39.51
CDY18190	Canola	plastid	38.12	39.35
Bra015272.1-P	Field mustard	plastid	37.5	38.71
CDX89861	Canola	plastid	37.5	38.71
HORVU1Hr1G087630.3	Barley	mitochondrion	41.88	37.85
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	39.38	36.63
HORVU1Hr1G087600.1	Barley	plastid	42.5	35.98
HORVU3Hr1G065250.1	Barley	plastid	37.5	35.71
HORVU3Hr1G032820.1	Barley	plastid	34.38	35.71
Bra032540.1-P	Field mustard	plastid	33.75	35.06
CDY10096	Canola	plastid	33.75	35.06
CDY32516	Canola	plastid	33.75	35.06
TraesCS3A01G163500.1	Wheat	plastid	32.5	30.95
KRH15571	Soybean	cytosol	26.25	29.79
AT1G03850.1	Thale cress	cytosol	29.38	29.56
TraesCS2D01G153900.1	Wheat	cytosol	30.62	29.17
KRH61512	Soybean	cytosol	24.38	28.68
KRH05438	Soybean	cytosol	26.25	28.57
CDY44992	Canola	cytosol	33.75	27.98
KRH52204	Soybean	cytosol	22.5	25.71

Protein Annotations

EntrezGene:100792704	MapMan:18.8.2	Gene3D:3.40.30.10	EMBL:ACUP02007760	EMBL:BT098512	UniProt:C6TLC8
EnsemblPlantsGene:GLYMA_12G207400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	InterPro:IPR002109
EnsemblPlants:KRH26996	ProteinID:KRH26996	ProteinID:KRH26996.1	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168
PANTHER:PTHR10168:SF111	SUPFAM:SSF52833	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0001B1668F	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:36722229..36723134

Molecular Weight (calculated)

17753.5 Da

IEP (calculated)

8.281

GRAVY (calculated)

-0.218

Length

160 amino acids

Sequence
(BLAST)

001: MHQAIPYRSW RPLHNPTTHF SPLPLIAHSH NDDDKMRNIV NNNNNNIHSS AGRMVLNMVS ENAVIVIGRR GCCMSHVVKH LLLGLGVNPA VYEVEEKDEE
101: GVAKQLEETV RSDGNTQQGK VQFPAVFIGG KLFGGLDRIM ATHIYGELVP ILKKAGALWL

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.