CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	CDX90725	AT4G09570.1	19130088
AT1G03850.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032540.1-P	Field mustard	plastid	99.35	99.35
CDY32516	Canola	plastid	99.35	99.35
CDY44992	Canola	cytosol	98.7	78.76
CDY18190	Canola	plastid	73.38	72.9
CDX89861	Canola	plastid	70.78	70.32
AT1G03850.1	Thale cress	cytosol	56.49	54.72
Solyc10g008150.1.1	Tomato	cytosol	32.47	45.87
GSMUA_Achr3P15490_001	Banana	plastid	35.06	45.76
GSMUA_Achr6P27020_001	Banana	cytosol	27.92	45.74
TraesCS5A01G096900.1	Wheat	cytosol	25.97	42.11
VIT_12s0028g03010.t01	Wine grape	cytosol	38.31	41.84
CDY30815	Canola	cytosol	33.77	40.62
TraesCS7D01G442400.1	Wheat	cytosol	29.22	40.54
PGSC0003DMT400056253	Potato	plastid	37.66	40.28
CDY34097	Canola	cytosol	35.71	40.15
Solyc07g053550.1.1	Tomato	cytosol	38.31	39.86
GSMUA_Achr10P...	Banana	cytosol	31.17	39.34
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	27.27	39.25
PGSC0003DMT400024317	Potato	plastid	37.66	38.67
CDY15662	Canola	cytosol	31.82	38.28
CDX94626	Canola	cytosol	31.82	38.28
TraesCS3B01G272600.1	Wheat	plastid	33.12	37.23
TraesCS1D01G405200.1	Wheat	plastid	31.82	37.12
TraesCS3D01G244800.1	Wheat	plastid	33.12	36.96
TraesCS3B01G194500.1	Wheat	cytosol	26.62	36.61
TraesCS3D01G169500.1	Wheat	cytosol	26.62	36.61
TraesCS3A01G246700.1	Wheat	plastid	32.47	36.23
Zm00001d039011_P001	Maize	cytosol	33.77	36.11
TraesCS1B01G425500.1	Wheat	cytosol	31.82	36.03
HORVU3Hr1G061080.1	Barley	plastid	32.47	35.97
HORVU2Hr1G026710.1	Barley	cytosol	25.97	35.71
Zm00001d009568_P001	Maize	cytosol	30.52	35.07
TraesCS2A01G149100.1	Wheat	cytosol	25.32	34.82
TraesCS2B01G174000.1	Wheat	cytosol	25.32	34.82
CDX70434	Canola	cytosol, plastid	31.17	34.29
CDX78456	Canola	plastid	31.17	34.29
TraesCS6B01G132800.1	Wheat	cytosol	31.17	34.29
GSMUA_Achr7P10990_001	Banana	cytosol	32.47	34.25
OQU78423	Sorghum	cytosol, mitochondrion	33.12	34.23
TraesCS1B01G425200.1	Wheat	plastid	31.82	34.03
Os01t0667900-01	Rice	cytosol	32.47	34.01
TraesCS1D01G404800.1	Wheat	cytosol	31.82	33.79
TraesCS1A01G396900.1	Wheat	cytosol	31.82	33.79
KRH26996	Soybean	mitochondrion	35.06	33.75
KRH55866	Soybean	cytosol, plastid	37.66	33.72
KRH25663	Soybean	cytosol, plastid	37.66	33.53
HORVU1Hr1G092260.1	Barley	mitochondrion	32.47	32.89
KRH22331	Soybean	mitochondrion	37.01	32.76
CDX75319	Canola	cytosol	30.52	32.64
TraesCS5A01G064100.1	Wheat	cytosol	29.22	32.61
CDX68934	Canola	cytosol	29.87	31.94
Zm00001d011543_P001	Maize	extracellular	32.47	31.45
CDX69718	Canola	cytosol, plastid	28.57	31.43
CDX97156	Canola	cytosol, plastid	28.57	31.43
CDY28280	Canola	cytosol	29.22	31.25
CDX72386	Canola	cytosol	28.57	31.21
TraesCS3A01G147400.1	Wheat	cytosol, plastid	28.57	31.21
CDY13515	Canola	cytosol	28.57	31.21
TraesCS2A01G232700.1	Wheat	cytosol	27.27	30.88
Os01t0241400-01	Rice	cytosol, plastid	27.27	30.88
CDY45025	Canola	cytosol	28.57	30.56
Zm00001d043932_P001	Maize	cytosol	31.17	30.19
HORVU3Hr1G032820.1	Barley	plastid	29.87	29.87
EES03406	Sorghum	cytosol, plastid	32.47	29.76
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	33.12	29.65
TraesCS4A01G254500.1	Wheat	plastid	27.92	29.25
TraesCS4A01G254400.1	Wheat	plastid	25.97	28.78
TraesCS1A01G397200.1	Wheat	plastid	30.52	28.48
HORVU2Hr1G057870.1	Barley	cytosol	29.87	28.4
HORVU1Hr1G087630.3	Barley	mitochondrion	31.82	27.68
HORVU3Hr1G065250.1	Barley	plastid	29.22	26.79
HORVU1Hr1G087600.1	Barley	plastid	31.82	25.93
TraesCS3A01G163500.1	Wheat	plastid	27.92	25.6
TraesCS2D01G153900.1	Wheat	cytosol	27.92	25.6

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:A0A078F9R6	UniProt:A0A078F9R6	EnsemblPlants:CDY10096	ProteinID:CDY10096
ProteinID:CDY10096.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00031896001	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin
InterPro:IPR002109	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF111	SUPFAM:SSF52833
TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0001BFBE80	SEG:seg	:	:

Description

BnaC08g43550DBnaC08g43550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9R6]

Coordinates

chrLK032000:+:916838..917340

Molecular Weight (calculated)

16725.3 Da

IEP (calculated)

9.283

GRAVY (calculated)

-0.170

Length

154 amino acids

Sequence
(BLAST)

001: MQKAVRPYES SWTKTIPGNS IFRPENEDKP SSSLSWLTSS PQKPSSLSIK KPNNVLVMEN AAVVFARKGC CMGHVAKRLL LTHGVNPLVV EIDEGDNNGD
101: NIIMSELGNN VISKEKLPVM FIGGKLFGGL ENLMAAHING DLGPTLRRAG ALWL

Best Arabidopsis Sequence Match ( AT1G03850.2 )
(BLAST)

001: MQKAIRPYES PWTKTVPGNS IFLLKNEDKP SSSSSSLSWL TSGSPKPTSI SNKRSSNLVV MENAVVVFAR RGCCLGHVAK RLLLTHGVNP VVVEIGEEDN
101: NNYDNIVSDK EKLPMMYIGG KLFGGLENLM AAHINGDLVP TLRQAGALWL

Arabidopsis Description

Glutaredoxin family protein [Source:TAIR;Acc:AT1G03850]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.