Factsheet for PGSC0003DMT400056253

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT1G03850.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008150.1.1	Tomato	cytosol	66.67	88.07
GSMUA_Achr6P27020_001	Banana	cytosol	34.03	52.13
PGSC0003DMT400024317	Potato	plastid	54.17	52.0
Bra030545.1-P	Field mustard	cytosol	33.33	51.06
TraesCS5A01G096900.1	Wheat	cytosol	33.33	50.53
VIT_12s0028g03010.t01	Wine grape	cytosol	48.61	49.65
TraesCS7D01G442400.1	Wheat	cytosol	36.81	47.75
GSMUA_Achr3P15490_001	Banana	plastid	38.19	46.61
KRH26996	Soybean	mitochondrion	49.31	44.38
KRH55866	Soybean	cytosol, plastid	52.78	44.19
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	32.64	43.93
GSMUA_Achr10P...	Banana	cytosol	36.11	42.62
TraesCS1D01G405200.1	Wheat	plastid	38.89	42.42
KRH22331	Soybean	mitochondrion	50.69	41.95
TraesCS1B01G425500.1	Wheat	cytosol	39.58	41.91
KRH25663	Soybean	cytosol, plastid	49.31	41.04
HORVU3Hr1G061080.1	Barley	plastid	39.58	41.01
TraesCS3D01G244800.1	Wheat	plastid	38.89	40.58
TraesCS3A01G246700.1	Wheat	plastid	38.89	40.58
TraesCS1B01G425200.1	Wheat	plastid	39.58	39.58
Zm00001d009568_P001	Maize	cytosol	36.81	39.55
TraesCS3B01G272600.1	Wheat	plastid	37.5	39.42
TraesCS1D01G404800.1	Wheat	cytosol	39.58	39.31
TraesCS1A01G396900.1	Wheat	cytosol	39.58	39.31
TraesCS6B01G132800.1	Wheat	cytosol	38.19	39.29
TraesCS3A01G147400.1	Wheat	cytosol, plastid	38.19	39.01
GSMUA_Achr7P10990_001	Banana	cytosol	38.89	38.36
OQU78423	Sorghum	cytosol, mitochondrion	39.58	38.26
Zm00001d039011_P001	Maize	cytosol	38.19	38.19
TraesCS4A01G254400.1	Wheat	plastid	36.81	38.13
Os01t0667900-01	Rice	cytosol	38.89	38.1
TraesCS4A01G254500.1	Wheat	plastid	38.89	38.1
CDY32516	Canola	plastid	40.28	37.66
CDY10096	Canola	plastid	40.28	37.66
Bra032540.1-P	Field mustard	plastid	40.28	37.66
TraesCS5A01G064100.1	Wheat	cytosol	35.42	36.96
HORVU1Hr1G092260.1	Barley	mitochondrion	38.89	36.84
CDY18190	Canola	plastid	39.58	36.77
Bra015272.1-P	Field mustard	plastid	38.89	36.13
CDX89861	Canola	plastid	38.89	36.13
TraesCS2A01G232700.1	Wheat	cytosol	34.03	36.03
Zm00001d043932_P001	Maize	cytosol	39.58	35.85
Zm00001d011543_P001	Maize	extracellular	39.58	35.85
PGSC0003DMT400058776	Potato	plastid	44.44	35.56
Os01t0241400-01	Rice	cytosol, plastid	33.33	35.29
TraesCS3B01G194500.1	Wheat	cytosol	27.08	34.82
EES03406	Sorghum	cytosol, plastid	40.28	34.52
HORVU2Hr1G057870.1	Barley	cytosol	38.19	33.95
HORVU2Hr1G026710.1	Barley	cytosol	26.39	33.93
TraesCS3D01G169500.1	Wheat	cytosol	26.39	33.93
TraesCS1A01G397200.1	Wheat	plastid	38.19	33.33
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	38.89	32.56
TraesCS2A01G149100.1	Wheat	cytosol	25.0	32.14
AT1G03850.1	Thale cress	cytosol	34.72	31.45
HORVU1Hr1G087630.3	Barley	mitochondrion	37.5	30.51
TraesCS2B01G174000.1	Wheat	cytosol	23.61	30.36
HORVU1Hr1G087600.1	Barley	plastid	39.58	30.16
CDY44992	Canola	cytosol	40.28	30.05
HORVU3Hr1G065250.1	Barley	plastid	34.72	29.76
PGSC0003DMT400050646	Potato	cytosol	27.78	27.78
HORVU3Hr1G032820.1	Barley	plastid	28.47	26.62
PGSC0003DMT400021236	Potato	cytosol	25.0	25.0
TraesCS3A01G163500.1	Wheat	plastid	27.78	23.81
TraesCS2D01G153900.1	Wheat	cytosol	26.39	22.62

Protein Annotations

EntrezGene:102593125	MapMan:18.8.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2
InterPro:Glutaredoxin	InterPro:IPR002109	UniProt:M1BZ71	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400021856	PGSC:PGSC0003DMG400021856
EnsemblPlants:PGSC0003DMT400056253	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF111	SUPFAM:SSF52833	TIGRFAMs:TIGR02189
InterPro:Thioredoxin-like_sf	UniParc:UPI0002967D58	RefSeq:XP_006366300.1	SEG:seg	:	:

Description

Glutaredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400021856]

Coordinates

chr10:+:3527290..3527977

Molecular Weight (calculated)

16005.5 Da

IEP (calculated)

7.290

GRAVY (calculated)

-0.015

Length

144 amino acids

Sequence
(BLAST)

001: MQDALPYKSW NFFPTNSTTL NKSSSLMINQ INYSKGNFKK MVTENAVIVF RRRGCCMSHV IKRLLQCLGA NPVMYDIEEK YENEAITELE DIGKIVGGGD
101: RSLSSLLPAV FIGGELFGGL DRIMEAHISG ELCPILKNAG ALWL

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.