Factsheet for PGSC0003DMT400050646

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069940.1.1	Tomato	cytosol	86.11	87.32
Bra006132.1-P	Field mustard	extracellular	29.86	60.56
VIT_04s0008g01120.t01	Wine grape	cytosol	56.25	59.12
PGSC0003DMT400021236	Potato	cytosol	56.94	56.94
KRH15571	Soybean	cytosol	51.39	52.48
AT4G33040.1	Thale cress	cytosol	50.0	50.0
Bra011408.1-P	Field mustard	cytosol	49.31	49.65
CDX68934	Canola	cytosol	49.31	49.31
GSMUA_Achr7P13560_001	Banana	cytosol	38.19	49.11
KRH05438	Soybean	cytosol	50.0	48.98
CDX75319	Canola	cytosol	48.61	48.61
CDY13515	Canola	cytosol	47.22	48.23
CDX72386	Canola	cytosol	47.22	48.23
Bra037028.1-P	Field mustard	cytosol	47.22	48.23
CDY28280	Canola	cytosol	47.22	47.22
CDX70434	Canola	cytosol, plastid	45.83	47.14
KRH61512	Soybean	cytosol	44.44	47.06
Zm00001d008843_P001	Maize	cytosol	38.89	46.67
Bra034545.1-P	Field mustard	cytosol	46.53	46.53
CDX78456	Canola	plastid	45.14	46.43
CDY45025	Canola	cytosol	45.83	45.83
KRH52204	Soybean	cytosol	44.44	45.71
CDX97156	Canola	cytosol, plastid	43.75	45.0
CDX69718	Canola	cytosol, plastid	43.75	45.0
Bra008925.1-P	Field mustard	cytosol, plastid	43.06	44.29
EES02308	Sorghum	cytosol	36.81	44.17
Zm00001d039468_P001	Maize	cytosol	36.81	44.17
GSMUA_Achr5P06460_001	Banana	cytosol, mitochondrion	37.5	43.9
Zm00001d037757_P001	Maize	cytosol	36.81	43.44
AT5G11930.1	Thale cress	cytosol, plastid	44.44	43.24
Os05t0198200-00	Rice	cytosol	40.97	42.75
TraesCS3A01G105300.1	Wheat	cytosol	35.42	42.5
TraesCS3B01G123700.1	Wheat	cytosol	35.42	42.5
TraesCS3D01G107400.1	Wheat	cytosol	35.42	42.5
Os01t0194600-02	Rice	cytosol	36.11	41.6
GSMUA_Achr10P...	Banana	mitochondrion	34.03	39.2
EES17851	Sorghum	cytosol	38.89	38.36
PGSC0003DMT400056253	Potato	plastid	27.78	27.78
PGSC0003DMT400024317	Potato	plastid	24.31	23.33
PGSC0003DMT400058776	Potato	plastid	28.47	22.78

Protein Annotations

EntrezGene:102605242	MapMan:18.8.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2
InterPro:Glutaredoxin	InterPro:IPR002109	UniProt:M1BQM2	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400019671	PGSC:PGSC0003DMG400019671
EnsemblPlants:PGSC0003DMT400050646	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF56	SUPFAM:SSF52833	TIGRFAMs:TIGR02189
InterPro:Thioredoxin-like_sf	UniParc:UPI0002949589	RefSeq:XP_006340236.1	SEG:seg	:	:

Description

Glutaredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400019671]

Coordinates

chr11:+:42256847..42257378

Molecular Weight (calculated)

15223.6 Da

IEP (calculated)

4.601

GRAVY (calculated)

0.258

Length

144 amino acids

Sequence
(BLAST)

001: MQGVRRYSPL TDGGGVTLEL ATTTNSPLAI DVTESTEMRI RRLISENTVV IFTRSGCCMC HVMKRLLLSA VSVHPTVIQL EEEEIATLPD GAGAGDAAED
101: GGEMPAMYIG GTRVGGLESL VALHLSGRLV PKLVEVGAIT EMVL

Best Arabidopsis Sequence Match ( AT4G33040.1 )
(BLAST)

001: MMQELGLQRF SNDVVRLDLT PPSQTSSTSL SIDEEESTEA KIRRLISEHP VIIFSRSSCC MCHVMKRLLA TIGVIPTVIE LDDHEVSSLP TALQDEYSGG
101: VSVVGPPPAV FIGRECVGGL ESLVALHLSG QLVPKLVQVG ALWV

Arabidopsis Description

GRXC6Glutaredoxin-C6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.