Factsheet for PGSC0003DMT400024317

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT1G03850.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053550.1.1	Tomato	cytosol	90.0	91.22
VIT_12s0028g03010.t01	Wine grape	cytosol	53.33	56.74
PGSC0003DMT400056253	Potato	plastid	52.0	54.17
GSMUA_Achr6P27020_001	Banana	cytosol	32.67	52.13
TraesCS5A01G096900.1	Wheat	cytosol	32.0	50.53
TraesCS7D01G442400.1	Wheat	cytosol	37.33	50.45
Bra030545.1-P	Field mustard	cytosol	30.67	48.94
TraesCS1D01G405200.1	Wheat	plastid	42.0	47.73
KRH26996	Soybean	mitochondrion	50.67	47.5
GSMUA_Achr3P15490_001	Banana	plastid	37.33	47.46
GSMUA_Achr10P...	Banana	cytosol	37.33	45.9
TraesCS1B01G425500.1	Wheat	cytosol	40.67	44.85
KRH22331	Soybean	mitochondrion	51.33	44.25
KRH55866	Soybean	cytosol, plastid	50.67	44.19
KRH25663	Soybean	cytosol, plastid	50.67	43.93
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	31.33	43.93
TraesCS3B01G194500.1	Wheat	cytosol	32.67	43.75
Zm00001d009568_P001	Maize	cytosol	38.67	43.28
TraesCS1B01G425200.1	Wheat	plastid	41.33	43.06
TraesCS6B01G132800.1	Wheat	cytosol	40.0	42.86
TraesCS3D01G169500.1	Wheat	cytosol	32.0	42.86
TraesCS1A01G396900.1	Wheat	cytosol	41.33	42.76
TraesCS1D01G404800.1	Wheat	cytosol	41.33	42.76
TraesCS5A01G064100.1	Wheat	cytosol	39.33	42.75
TraesCS4A01G254400.1	Wheat	plastid	39.33	42.45
Os01t0241400-01	Rice	cytosol, plastid	38.0	41.91
TraesCS3A01G147400.1	Wheat	cytosol, plastid	39.33	41.84
HORVU3Hr1G061080.1	Barley	plastid	38.67	41.73
Zm00001d039011_P001	Maize	cytosol	40.0	41.67
TraesCS3B01G272600.1	Wheat	plastid	38.0	41.61
Os01t0667900-01	Rice	cytosol	40.67	41.5
TraesCS3A01G246700.1	Wheat	plastid	38.0	41.3
TraesCS3D01G244800.1	Wheat	plastid	38.0	41.3
OQU78423	Sorghum	cytosol, mitochondrion	40.67	40.94
HORVU1Hr1G092260.1	Barley	mitochondrion	41.33	40.79
Zm00001d011543_P001	Maize	extracellular	42.67	40.25
GSMUA_Achr7P10990_001	Banana	cytosol	38.67	39.73
TraesCS2A01G232700.1	Wheat	cytosol	36.0	39.71
TraesCS4A01G254500.1	Wheat	plastid	38.67	39.46
Zm00001d043932_P001	Maize	cytosol	41.33	38.99
EES03406	Sorghum	cytosol, plastid	43.33	38.69
TraesCS2A01G149100.1	Wheat	cytosol	28.67	38.39
TraesCS2B01G174000.1	Wheat	cytosol	28.67	38.39
TraesCS1A01G397200.1	Wheat	plastid	42.0	38.18
CDY32516	Canola	plastid	38.67	37.66
Bra032540.1-P	Field mustard	plastid	38.67	37.66
CDY10096	Canola	plastid	38.67	37.66
CDY18190	Canola	plastid	38.67	37.42
Bra015272.1-P	Field mustard	plastid	38.0	36.77
CDX89861	Canola	plastid	38.0	36.77
HORVU2Hr1G026710.1	Barley	cytosol	27.33	36.61
HORVU2Hr1G057870.1	Barley	cytosol	39.33	36.42
PGSC0003DMT400058776	Potato	plastid	43.33	36.11
HORVU1Hr1G087630.3	Barley	mitochondrion	40.67	34.46
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	38.0	33.14
HORVU1Hr1G087600.1	Barley	plastid	40.67	32.28
HORVU3Hr1G032820.1	Barley	plastid	32.67	31.82
HORVU3Hr1G065250.1	Barley	plastid	35.33	31.55
AT1G03850.1	Thale cress	cytosol	32.67	30.82
CDY44992	Canola	cytosol	38.67	30.05
TraesCS3A01G163500.1	Wheat	plastid	33.33	29.76
TraesCS2D01G153900.1	Wheat	cytosol	29.33	26.19
PGSC0003DMT400050646	Potato	cytosol	23.33	24.31
PGSC0003DMT400021236	Potato	cytosol	21.33	22.22

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin
InterPro:IPR002109	UniProt:M1AJW4	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400009399	PGSC:PGSC0003DMG400009399	EnsemblPlants:PGSC0003DMT400024317
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF111	SUPFAM:SSF52833	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf
UniParc:UPI0002962341	SEG:seg	:	:	:	:

Description

Glutaredoxin-C9 [Source:PGSC_GENE;Acc:PGSC0003DMG400009399]

Coordinates

chr7:-:49795510..49796201

Molecular Weight (calculated)

16458.9 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.131

Length

150 amino acids

Sequence
(BLAST)

001: MQQALPYKSS CLPITLRVHP NDRHHRVSTS NSSLYVKGSK EELNNVVKDN AVIVVGRRGC CMSHVVKRLL HCLGANPAIY EIEEEDENEV VDELENIIVA
101: GGGDRKETGR LQFPAVFVGG ELFGGLDRIM AAHITGELTP VLKKAGALWL

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.