CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	KRG91803	AT4G09570.1	19130088
AT1G03850.1	KRH34983	AT4G09570.1	19130088
AT1G03850.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26996	Soybean	mitochondrion	74.71	81.25
VIT_12s0028g03010.t01	Wine grape	cytosol	48.28	59.57
Solyc10g008150.1.1	Tomato	cytosol	36.78	58.72
KRH10949	Soybean	cytosol	44.25	57.89
Bra030545.1-P	Field mustard	cytosol	31.03	57.45
KRH21345	Soybean	plastid	43.1	56.39
TraesCS7D01G442400.1	Wheat	cytosol	35.63	55.86
KRH55866	Soybean	cytosol, plastid	54.6	55.23
KRH25663	Soybean	cytosol, plastid	54.6	54.91
TraesCS5A01G096900.1	Wheat	cytosol	29.89	54.74
GSMUA_Achr6P27020_001	Banana	cytosol	29.31	54.26
GSMUA_Achr3P15490_001	Banana	plastid	36.78	54.24
KRH20376	Soybean	plastid	40.23	51.47
Solyc07g053550.1.1	Tomato	cytosol	43.68	51.35
PGSC0003DMT400024317	Potato	plastid	44.25	51.33
TraesCS1D01G405200.1	Wheat	plastid	38.51	50.76
PGSC0003DMT400056253	Potato	plastid	41.95	50.69
TraesCS3B01G272600.1	Wheat	plastid	39.66	50.37
TraesCS1B01G425500.1	Wheat	cytosol	39.08	50.0
HORVU3Hr1G061080.1	Barley	plastid	39.66	49.64
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	30.46	49.53
TraesCS3A01G246700.1	Wheat	plastid	39.08	49.28
TraesCS3D01G244800.1	Wheat	plastid	39.08	49.28
GSMUA_Achr10P...	Banana	cytosol	33.91	48.36
Zm00001d009568_P001	Maize	cytosol	36.21	47.01
Os01t0667900-01	Rice	cytosol	39.66	46.94
TraesCS1B01G425200.1	Wheat	plastid	38.51	46.53
TraesCS1D01G404800.1	Wheat	cytosol	38.51	46.21
TraesCS1A01G396900.1	Wheat	cytosol	38.51	46.21
TraesCS3B01G194500.1	Wheat	cytosol	29.31	45.54
Zm00001d011543_P001	Maize	extracellular	41.38	45.28
TraesCS6B01G132800.1	Wheat	cytosol	36.21	45.0
HORVU1Hr1G092260.1	Barley	mitochondrion	39.08	44.74
TraesCS3D01G169500.1	Wheat	cytosol	28.74	44.64
GSMUA_Achr7P10990_001	Banana	cytosol	37.36	44.52
Zm00001d039011_P001	Maize	cytosol	36.78	44.44
OQU78423	Sorghum	cytosol, mitochondrion	37.93	44.3
Zm00001d043932_P001	Maize	cytosol	40.23	44.03
TraesCS3A01G147400.1	Wheat	cytosol, plastid	35.63	43.97
TraesCS4A01G254400.1	Wheat	plastid	35.06	43.88
TraesCS4A01G254500.1	Wheat	plastid	36.78	43.54
TraesCS5A01G064100.1	Wheat	cytosol	34.48	43.48
HORVU2Hr1G026710.1	Barley	cytosol	27.59	42.86
TraesCS2A01G232700.1	Wheat	cytosol	33.33	42.65
EES03406	Sorghum	cytosol, plastid	40.8	42.26
TraesCS2B01G174000.1	Wheat	cytosol	26.44	41.07
TraesCS2A01G149100.1	Wheat	cytosol	25.86	40.18
CDY18190	Canola	plastid	35.63	40.0
Os01t0241400-01	Rice	cytosol, plastid	31.03	39.71
HORVU2Hr1G057870.1	Barley	cytosol	36.78	39.51
CDX89861	Canola	plastid	35.06	39.35
Bra015272.1-P	Field mustard	plastid	35.06	39.35
TraesCS1A01G397200.1	Wheat	plastid	36.78	38.79
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	37.93	38.37
CDY10096	Canola	plastid	32.76	37.01
Bra032540.1-P	Field mustard	plastid	32.76	37.01
CDY32516	Canola	plastid	32.76	37.01
HORVU1Hr1G087630.3	Barley	mitochondrion	37.36	36.72
HORVU1Hr1G087600.1	Barley	plastid	39.08	35.98
HORVU3Hr1G065250.1	Barley	plastid	34.48	35.71
HORVU3Hr1G032820.1	Barley	plastid	31.03	35.06
KRH15571	Soybean	cytosol	25.86	31.91
AT1G03850.1	Thale cress	cytosol	28.74	31.45
TraesCS3A01G163500.1	Wheat	plastid	29.31	30.36
KRH05438	Soybean	cytosol	25.29	29.93
CDY44992	Canola	cytosol	32.76	29.53
KRH61512	Soybean	cytosol	22.99	29.41
TraesCS2D01G153900.1	Wheat	cytosol	27.01	27.98
KRH52204	Soybean	cytosol	21.26	26.43

Protein Annotations

EntrezGene:100818445	MapMan:18.8.2	Gene3D:3.40.30.10	EMBL:ACUP02008406	EnsemblPlantsGene:GLYMA_13G293700	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	UniProt:I1M3P3	InterPro:IPR002109	EnsemblPlants:KRH22331
ProteinID:KRH22331	ProteinID:KRH22331.1	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF111
SUPFAM:SSF52833	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0001CA90B5	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:39331142..39332132

Molecular Weight (calculated)

19281.5 Da

IEP (calculated)

8.746

GRAVY (calculated)

-0.195

Length

174 amino acids

Sequence
(BLAST)

001: MHQAIPYRSW RHLHNPTTHF TPLPLITHSH NDDDKKTKNI IVNNNNTINI HSSSVLVSPK EKEGMKMVLN MVSENAVIVI ARRGCCMSHV VKRLLLGLGV
101: NPAVYEVEEK DEEGVATQLE ATIRSDDGNT QQGKVQFPTV FIGGKLFGGL DRIMATHISG ELVPILKKAG ALWL

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.