Factsheet for Zm00001d039011_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d008225_P001
Zm00001d010658_P001
Zm00001d012553_P003
Zm00001d018045_P001
Zm00001d022542_P002
Zm00001d023560_P002
Zm00001d028936_P001
Zm00001d037221_P001
Zm00001d039469_P001
Zm00001d043153_P001
Zm00001d044836_P001
Zm00001d052256_P001
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT1G03850.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT1G03850.1	Zm00001d053016_P002	AT4G09570.1	19130088
AT1G28480.1	Zm00001d039469_P001	AT1G64280.1	17397508
AT1G28480.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT1G28480.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT1G28480.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT1G28480.1	Zm00001d052256_P001	AT3G47620.1	21798944
AT1G28480.1	Zm00001d008225_P001	AT5G06960.1	21798944
AT1G28480.1	Zm00001d010658_P001	AT5G06960.1	21798944
AT1G28480.1	Zm00001d012553_P003	AT5G06960.1	21798944
AT1G28480.1	Zm00001d022542_P002	AT5G06960.1	21798944
AT1G28480.1	Zm00001d028936_P001	AT5G06960.1	21798944
AT1G28480.1	Zm00001d043153_P001	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G442400.1	Wheat	cytosol	58.33	75.68
TraesCS5A01G096900.1	Wheat	cytosol	47.22	71.58
TraesCS1D01G405200.1	Wheat	plastid	65.28	71.21
OQU78423	Sorghum	cytosol, mitochondrion	72.92	70.47
TraesCS1B01G425500.1	Wheat	cytosol	63.89	67.65
TraesCS1B01G425200.1	Wheat	plastid	65.97	65.97
Zm00001d009568_P001	Maize	cytosol	61.11	65.67
TraesCS1A01G396900.1	Wheat	cytosol	65.97	65.52
TraesCS1D01G404800.1	Wheat	cytosol	65.28	64.83
TraesCS3A01G147400.1	Wheat	cytosol, plastid	60.42	61.7
TraesCS4A01G254400.1	Wheat	plastid	59.03	61.15
TraesCS2A01G232700.1	Wheat	cytosol	57.64	61.03
TraesCS5A01G064100.1	Wheat	cytosol	58.33	60.87
TraesCS6B01G132800.1	Wheat	cytosol	58.33	60.0
TraesCS4A01G254500.1	Wheat	plastid	60.42	59.18
GSMUA_Achr6P27020_001	Banana	cytosol	38.19	58.51
Zm00001d043932_P001	Maize	cytosol	64.58	58.49
GSMUA_Achr3P15490_001	Banana	plastid	47.92	58.47
HORVU1Hr1G092260.1	Barley	mitochondrion	61.11	57.89
Zm00001d011543_P001	Maize	extracellular	63.89	57.86
TraesCS1A01G397200.1	Wheat	plastid	63.19	55.15
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	38.89	52.34
HORVU2Hr1G057870.1	Barley	cytosol	57.64	51.23
HORVU1Hr1G087630.3	Barley	mitochondrion	61.81	50.28
HORVU1Hr1G087600.1	Barley	plastid	65.28	49.74
HORVU3Hr1G065250.1	Barley	plastid	57.64	49.4
Bra030545.1-P	Field mustard	cytosol	31.94	48.94
KRH21345	Soybean	plastid	44.44	48.12
KRH20376	Soybean	plastid	45.14	47.79
KRH10949	Soybean	cytosol	43.75	47.37
CDY15662	Canola	cytosol	41.67	46.88
CDX94626	Canola	cytosol	40.97	46.09
CDY30815	Canola	cytosol	40.97	46.09
AT1G28480.1	Thale cress	cytosol	43.75	45.99
Solyc10g008150.1.1	Tomato	cytosol	34.72	45.87
VIT_12s0028g03010.t01	Wine grape	cytosol	44.44	45.39
Bra030102.1-P	Field mustard	cytosol	42.36	44.85
Bra032911.1-P	Field mustard	cytosol	40.97	43.07
CDY34097	Canola	cytosol	40.97	43.07
Solyc10g008930.1.1	Tomato	cytosol	37.5	42.52
VIT_10s0003g00390.t01	Wine grape	cytosol	43.75	42.0
Solyc07g053550.1.1	Tomato	cytosol	42.36	41.22
PGSC0003DMT400024317	Potato	plastid	41.67	40.0
KRH26996	Soybean	mitochondrion	44.44	40.0
PGSC0003DMT400056253	Potato	plastid	38.19	38.19
Zm00001d037757_P001	Maize	cytosol	31.94	37.7
KRH55866	Soybean	cytosol, plastid	44.44	37.21
KRH22331	Soybean	mitochondrion	44.44	36.78
Zm00001d008843_P001	Maize	cytosol	30.56	36.67
KRH25663	Soybean	cytosol, plastid	43.75	36.42
CDY18190	Canola	plastid	38.89	36.13
Zm00001d039468_P001	Maize	cytosol	29.86	35.83
Bra015272.1-P	Field mustard	plastid	38.19	35.48
Solyc02g077580.1.1	Tomato	cytosol, plastid	34.03	34.27
CDX89861	Canola	plastid	36.81	34.19
CDY32516	Canola	plastid	36.11	33.77
Bra032540.1-P	Field mustard	plastid	36.11	33.77
CDY10096	Canola	plastid	36.11	33.77
PGSC0003DMT400058776	Potato	plastid	39.58	31.67
VIT_00s0199g00290.t01	Wine grape	extracellular	25.0	30.25
AT1G03850.1	Thale cress	cytosol	31.94	28.93
CDY44992	Canola	cytosol	36.11	26.94

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	UniProt:A0A1D6MCV5	ProteinID:AQK88516.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114
InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	InterPro:IPR002109	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168
PANTHER:PTHR10168:SF199	SUPFAM:SSF52833	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0001CAABDA	EnsemblPlantsGene:Zm00001d039011
EnsemblPlants:Zm00001d039011_P001	EnsemblPlants:Zm00001d039011_T001	SEG:seg	:	:	:

Description

Grx_I1-glutaredoxin subgroup III

Coordinates

chr6:+:168696882..168697316

Molecular Weight (calculated)

14774.9 Da

IEP (calculated)

4.686

GRAVY (calculated)

0.343

Length

144 amino acids

Sequence
(BLAST)

001: MYQAIPYSAG QPWPRPAPTI GPDVAEEEGL LAASQQQAST PAEAAARVEE EEVRRAVAEC PVLVVGVRGC CLSHVVKRLL QGLGVNPAVH EVAGAEADLA
101: AAGVAALPAV FVGGRLLGGL DRLMAAHISG DLVPILKDAG ALWL

Best Arabidopsis Sequence Match ( AT1G03850.2 )
(BLAST)

001: MQKAIRPYES PWTKTVPGNS IFLLKNEDKP SSSSSSLSWL TSGSPKPTSI SNKRSSNLVV MENAVVVFAR RGCCLGHVAK RLLLTHGVNP VVVEIGEEDN
101: NNYDNIVSDK EKLPMMYIGG KLFGGLENLM AAHINGDLVP TLRQAGALWL

Arabidopsis Description

Glutaredoxin family protein [Source:TAIR;Acc:AT1G03850]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.