Factsheet for Solyc07g053550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
extracellular 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT1G03850.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024317	Potato	plastid	91.22	90.0
Solyc10g008150.1.1	Tomato	cytosol	46.62	63.3
VIT_12s0028g03010.t01	Wine grape	cytosol	50.68	53.19
GSMUA_Achr6P27020_001	Banana	cytosol	33.11	52.13
TraesCS5A01G096900.1	Wheat	cytosol	32.43	50.53
TraesCS7D01G442400.1	Wheat	cytosol	37.84	50.45
Bra030545.1-P	Field mustard	cytosol	30.41	47.87
GSMUA_Achr10P...	Banana	cytosol	39.19	47.54
KRH26996	Soybean	mitochondrion	51.35	47.5
GSMUA_Achr3P15490_001	Banana	plastid	37.84	47.46
TraesCS1D01G405200.1	Wheat	plastid	41.22	46.21
Solyc10g008930.1.1	Tomato	cytosol	39.19	45.67
TraesCS3B01G194500.1	Wheat	cytosol	34.46	45.54
TraesCS3D01G169500.1	Wheat	cytosol	33.78	44.64
KRH55866	Soybean	cytosol, plastid	51.35	44.19
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	31.76	43.93
KRH22331	Soybean	mitochondrion	51.35	43.68
TraesCS1B01G425500.1	Wheat	cytosol	39.86	43.38
KRH25663	Soybean	cytosol, plastid	50.68	43.35
TraesCS3B01G272600.1	Wheat	plastid	39.86	43.07
Zm00001d009568_P001	Maize	cytosol	38.51	42.54
HORVU3Hr1G061080.1	Barley	plastid	39.86	42.45
TraesCS1B01G425200.1	Wheat	plastid	41.22	42.36
Zm00001d039011_P001	Maize	cytosol	41.22	42.36
OQU78423	Sorghum	cytosol, mitochondrion	42.57	42.28
TraesCS6B01G132800.1	Wheat	cytosol	39.86	42.14
TraesCS1D01G404800.1	Wheat	cytosol	41.22	42.07
TraesCS1A01G396900.1	Wheat	cytosol	41.22	42.07
TraesCS3D01G244800.1	Wheat	plastid	39.19	42.03
TraesCS3A01G246700.1	Wheat	plastid	39.19	42.03
Os01t0241400-01	Rice	cytosol, plastid	37.84	41.18
Os01t0667900-01	Rice	cytosol	40.54	40.82
TraesCS5A01G064100.1	Wheat	cytosol	37.84	40.58
GSMUA_Achr7P10990_001	Banana	cytosol	39.86	40.41
TraesCS4A01G254400.1	Wheat	plastid	37.84	40.29
HORVU1Hr1G092260.1	Barley	mitochondrion	41.22	40.13
TraesCS3A01G147400.1	Wheat	cytosol, plastid	37.84	39.72
CDY18190	Canola	plastid	41.22	39.35
TraesCS2A01G149100.1	Wheat	cytosol	29.73	39.29
TraesCS2A01G232700.1	Wheat	cytosol	35.81	38.97
Bra015272.1-P	Field mustard	plastid	40.54	38.71
TraesCS2B01G174000.1	Wheat	cytosol	29.05	38.39
CDY32516	Canola	plastid	39.86	38.31
CDY10096	Canola	plastid	39.86	38.31
Bra032540.1-P	Field mustard	plastid	39.86	38.31
TraesCS4A01G254500.1	Wheat	plastid	37.84	38.1
CDX89861	Canola	plastid	39.86	38.06
Zm00001d011543_P001	Maize	extracellular	40.54	37.74
Zm00001d043932_P001	Maize	cytosol	40.54	37.74
EES03406	Sorghum	cytosol, plastid	41.89	36.9
HORVU2Hr1G026710.1	Barley	cytosol	27.7	36.61
HORVU2Hr1G057870.1	Barley	cytosol	39.86	36.42
TraesCS1A01G397200.1	Wheat	plastid	40.54	36.36
Solyc02g077580.1.1	Tomato	cytosol, plastid	33.78	34.97
GSMUA_Achr2P15240_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	40.54	34.88
HORVU1Hr1G087630.3	Barley	mitochondrion	40.54	33.9
HORVU1Hr1G087600.1	Barley	plastid	41.22	32.28
HORVU3Hr1G065250.1	Barley	plastid	36.49	32.14
HORVU3Hr1G032820.1	Barley	plastid	33.11	31.82
AT1G03850.1	Thale cress	cytosol	32.43	30.19
CDY44992	Canola	cytosol	39.19	30.05
TraesCS3A01G163500.1	Wheat	plastid	33.78	29.76
TraesCS2D01G153900.1	Wheat	cytosol	29.73	26.19
Solyc08g062970.1.1	Tomato	cytosol	23.65	25.18
Solyc11g069940.1.1	Tomato	cytosol	22.97	23.94

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin
InterPro:IPR002109	UniProt:K4CFQ0	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF111
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc07g053550.1	EnsemblPlants:Solyc07g053550.1.1	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI000276BE38
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:61974258..61974704

Molecular Weight (calculated)

16282.8 Da

IEP (calculated)

6.666

GRAVY (calculated)

-0.050

Length

148 amino acids

Sequence
(BLAST)

001: MMQQALPYKS SCISLTPRVD RHHRVSNINS LLYVKGSKEE LNNVVKDNAV IVVGRRGCCM SHVVKRLLHC LGANPAIYEI EEDDENEVVD ELENIIVAGG
101: SDRKDTGRLQ FPAVFVGGEL FGGLDRIMAA HITGELTPVL KKAGALWL

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.