CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES00131
EES02530
EES03778
EES07255
EES09373
EES16732
KXG22247
KXG36997
KXG39494

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03850.1	EES09373	AT4G09570.1	19130088
AT1G03850.1	EES16732	AT4G09570.1	19130088
AT1G28480.1	EES00131	AT1G64280.1	17397508
AT1G28480.1	EER88112	AT3G47620.1	21798944
AT1G28480.1	EES07255	AT3G47620.1	21798944
AT1G28480.1	EES02530	AT5G06960.1	21798944
AT1G28480.1	EES03778	AT5G06960.1	21798944
AT1G28480.1	KXG22247	AT5G06960.1	21798944
AT1G28480.1	KXG36997	AT5G06960.1	21798944
AT1G28480.1	KXG39494	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G244800.1	Wheat	plastid	62.5	76.09
TraesCS3A01G246700.1	Wheat	plastid	62.5	76.09
TraesCS3B01G272600.1	Wheat	plastid	60.71	74.45
Zm00001d043932_P001	Maize	cytosol	70.24	74.21
Os01t0667900-01	Rice	cytosol	64.88	74.15
HORVU3Hr1G061080.1	Barley	plastid	60.71	73.38
GSMUA_Achr6P27020_001	Banana	cytosol	35.12	62.77
OQU78423	Sorghum	cytosol, mitochondrion	52.98	59.73
GSMUA_Achr3P15490_001	Banana	plastid	41.67	59.32
GSMUA_Achr1P13880_001	Banana	cytosol, extracellular	34.52	54.21
KRH20376	Soybean	plastid	41.67	51.47
CDY15662	Canola	cytosol	38.69	50.78
KRH10949	Soybean	cytosol	39.88	50.38
Bra030545.1-P	Field mustard	cytosol	27.98	50.0
KRH21345	Soybean	plastid	38.69	48.87
VIT_12s0028g03010.t01	Wine grape	cytosol	40.48	48.23
Bra030102.1-P	Field mustard	cytosol	38.69	47.79
Solyc10g008150.1.1	Tomato	cytosol	30.36	46.79
CDX94626	Canola	cytosol	35.12	46.09
AT1G28480.1	Thale cress	cytosol	36.9	45.26
VIT_10s0003g00390.t01	Wine grape	cytosol	39.88	44.67
CDY30815	Canola	cytosol	33.33	43.75
PGSC0003DMT400024317	Potato	plastid	38.69	43.33
KRH26996	Soybean	mitochondrion	41.07	43.12
Solyc10g008930.1.1	Tomato	cytosol	32.14	42.52
Bra032911.1-P	Field mustard	cytosol	34.52	42.34
CDY34097	Canola	cytosol	34.52	42.34
Solyc07g053550.1.1	Tomato	cytosol	36.9	41.89
KRH25663	Soybean	cytosol, plastid	42.86	41.62
KRH22331	Soybean	mitochondrion	42.26	40.8
PGSC0003DMT400056253	Potato	plastid	34.52	40.28
KRH55866	Soybean	cytosol, plastid	41.07	40.12
EES02308	Sorghum	cytosol	28.57	40.0
EES17851	Sorghum	cytosol	30.95	35.62
CDY18190	Canola	plastid	32.74	35.48
Solyc02g077580.1.1	Tomato	cytosol, plastid	29.76	34.97
Bra015272.1-P	Field mustard	plastid	32.14	34.84
CDX89861	Canola	plastid	31.55	34.19
CDY32516	Canola	plastid	29.76	32.47
CDY10096	Canola	plastid	29.76	32.47
Bra032540.1-P	Field mustard	plastid	29.76	32.47
PGSC0003DMT400058776	Potato	plastid	34.52	32.22
VIT_00s0199g00290.t01	Wine grape	extracellular	22.62	31.93
AT1G03850.1	Thale cress	cytosol	27.38	28.93
CDY44992	Canola	cytosol	29.76	25.91

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	EntrezGene:8080824	UniProt:C5XG10	EnsemblPlants:EES03406	ProteinID:EES03406
ProteinID:EES03406.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin	InterPro:IPR002109
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF199	EnsemblPlantsGene:SORBI_3003G250600	SUPFAM:SSF52833
TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI0001A84A9A	RefSeq:XP_002458286.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:58897373..58901369

Molecular Weight (calculated)

16612.2 Da

IEP (calculated)

5.658

GRAVY (calculated)

0.529

Length

168 amino acids

Sequence
(BLAST)

001: MYQAIPYSSA RPWLMPPAAE AAAVVAVKPE PVVVTTTTVV AEAAAAAEVE SARPGAAAGA GAGAGDDDGG KAEVGRAVAE SPVLVVGRRG CCLSHVVKRL
101: LQGLGVNPAV HEVADESALA GVVPAADAAA LPAVFVGGKL LGGLDRLMAV HISGELVPIL KKAGALWL

Best Arabidopsis Sequence Match ( AT1G28480.1 )
(BLAST)

001: MQGTISCARN YNMTTTVGES LRPLSLKTQG NGERVRMVVE ENAVIVIGRR GCCMCHVVRR LLLGLGVNPA VLEIDEERED EVLSELENIG VQGGGGTVKL
101: PAVYVGGRLF GGLDRVMATH ISGELVPILK EVGALWL

Arabidopsis Description

GRXC9Glutaredoxin-C9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.