Factsheet for Zm00001d023220_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041347_P001	Maize	cytosol, peroxisome, plastid	58.06	94.03
EES09088	Sorghum	cytosol	86.99	87.16
EES16490	Sorghum	cytosol	85.63	85.3
TraesCS5D01G158200.2	Wheat	cytosol	70.87	70.87
TraesCS5A01G152900.1	Wheat	cytosol	70.49	70.49
TraesCS5B01G151700.1	Wheat	cytosol	70.29	70.29
Zm00001d010590_P001	Maize	plasma membrane	49.9	48.77
GSMUA_Achr5P14260_001	Banana	cytosol	48.35	46.46
GSMUA_Achr4P18790_001	Banana	cytosol	49.71	46.21
Zm00001d012467_P001	Maize	plasma membrane	46.41	44.92
VIT_13s0067g01510.t01	Wine grape	cytosol	46.02	44.38
PGSC0003DMT400020747	Potato	mitochondrion	45.05	44.27
Solyc04g079270.2.1	Tomato	endoplasmic reticulum, nucleus	44.85	44.08
KRG97698	Soybean	nucleus	44.66	43.4
CDY00993	Canola	cytosol	41.16	42.83
CDX73892	Canola	nucleus	42.14	42.55
AT5G05520.1	Thale cress	cytosol	43.11	42.37
KRH31173	Soybean	nucleus	43.3	42.23
Bra001389.1-P	Field mustard	nucleus	41.75	42.16
CDY00721	Canola	nucleus	40.97	41.87
KRH73273	Soybean	nucleus	42.91	41.54
Bra034868.1-P	Field mustard	cytosol	40.39	41.43
CDY08552	Canola	cytosol	40.39	41.43
AT3G11070.1	Thale cress	nucleus	41.16	40.77
CDX98848	Canola	cytosol	41.16	40.3
Bra009118.1-P	Field mustard	nucleus	41.16	40.23
CDX70145	Canola	cytosol	40.97	40.11
KRH14921	Soybean	cytosol	41.16	39.63

Protein Annotations

EnsemblPlants:Zm00001d023220_P001	EnsemblPlants:Zm00001d023220_T001	EnsemblPlantsGene:Zm00001d023220	EntrezGene:103640648	Gene3D:2.40.160.50	GO:GO:0005575
GO:GO:0016020	GO:GO:0019867	InterPro:Bac_surfAg_D15	PANTHER:PTHR12815	PANTHER:PTHR12815:SF15	PFAM:PF01103
ProteinID:AQK38616.1	SEG:seg	UniParc:UPI000220F4E0	UniProt:K7TLK6	MapMan:23.2.2.1	:

Description

Outer membrane OMP85 family protein

Coordinates

chr10:-:700409..703173

Molecular Weight (calculated)

55050.3 Da

IEP (calculated)

5.890

GRAVY (calculated)

-0.124

Length

515 amino acids

Sequence
(BLAST)

001: MANASDSDIP SVTHDLDEDE EFDDDDLDDE DDDGGEPLAS SSEAARLEAV LRRLTADEVR IRVHQVTIRG CARTRRAAVE AAVGPDVSRA ATVRDLVRAA
101: AAAGDRLRCL GAFDTVSITL DAAPPGIPGS AVVVLIDVAE ARGRAAGDFG VFANTQSRSC SLEGSVKLKN LFGYCETWDA SGALELDKTA ELSAGVQMPR
201: IGAIPTPLMA RISFVSDDWL KSSLKEHLMG VSVGLLSTIN HNIAYNLTWR KLTDPTRMSS NSVQEELGHS LLSSIKYAYK VDRRDSSIRP ARGYAFMSTS
301: QVGGLAPGSK YSRFLRQEFD LRVALPLGVL NGALNAGVAA GVIHPLERGS AGSVSPLVER FNLGGNRALV CRLGGPSSLL GFKTRGLRAA TESRTQDPNT
401: PGNGTSPSPE LNGLGGEVAV TAFADLSFDL PLKPLRELGI HGHAFVCAGN LGRLTECDLR KFPVTEFLQT FRSCAGWGVV VPTRLFRVEM NYCYILKQLD
501: HDGGKTGIQL NFSSS

Best Arabidopsis Sequence Match ( AT5G05520.1 )
(BLAST)

001: MENPAEKPDP NPSKPKIESE DEREELGDIN GDEEEEEEYE EEDDGKPRTR EDAIADRIKA ESLFRRMRAT PVAVRVHDVI VKGNEKTKDH VIEAEVDVVR
101: QATTLQELLK ASKVANFNLQ ALDIFDSVKI TLDSGPPELP GTTNVVIDVV ESKSPITGQI GTFTKAEARS SSLEGSLKYK NIFGYGDIWD GSLAYGCDHS
201: AEVGLGMYLP RFRGRPTPFT SRVYLSTQDW LKFSSYKERA LGLSLGLIAS KYHELAYNIA WRNLIDPSQM ASRSIRRQLG HNLVSALKYT FKFDQRNSSL
301: RPTRGYSFIS TSQIGGLAPD SRTLRFLRQE IDLRYAVPLG FYRAALNFGI AGGITFPWGS GYKSRASCVP ERFFLGGNIS PVCSLGGPSA LWGFKTRGLG
401: PNEPRREVQD DESGDTYERD FVGGDVAVTA FADLSFDFPL KWFRDRGIHG HVFACAGNMA ELSENKYRNF TAPKLLETFR SSVGAGIVVP TSLFRMELNY
501: CHILKKQEHD RAKSGFFMTF STSS

Arabidopsis Description

Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.