Factsheet for Solyc04g079270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 4
mitochondrion 3
golgi 1
extracellular 1
plasma membrane 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020747	Potato	mitochondrion	88.74	88.74
VIT_13s0067g01510.t01	Wine grape	cytosol	65.84	64.61
Os05t0470800-01	Rice	mitochondrion	61.45	61.92
TraesCS2A01G102400.1	Wheat	mitochondrion	32.82	61.43
CDY00993	Canola	cytosol	57.44	60.81
TraesCS2D01G101900.1	Wheat	cytosol	60.11	60.58
TraesCS2B01G119500.1	Wheat	mitochondrion	57.44	60.56
Zm00001d010590_P001	Maize	plasma membrane	60.69	60.34
TraesCS1A01G296200.1	Wheat	cytosol	59.73	60.31
TraesCS1B01G305000.1	Wheat	cytosol	58.78	60.16
AT5G05520.1	Thale cress	cytosol	59.73	59.73
TraesCS1D01G295900.1	Wheat	cytosol	59.16	59.27
EES19675	Sorghum	cytosol	59.54	58.87
CDY00721	Canola	nucleus	56.49	58.73
KRG97698	Soybean	nucleus	59.16	58.49
AT3G11070.1	Thale cress	nucleus	57.82	58.27
Bra001389.1-P	Field mustard	nucleus	56.49	58.04
CDY08552	Canola	cytosol	55.53	57.97
Bra034868.1-P	Field mustard	cytosol	55.53	57.97
CDX73892	Canola	nucleus	56.3	57.84
KRH31173	Soybean	nucleus	58.02	57.58
EES01699	Sorghum	cytosol	58.59	57.38
KRH73273	Soybean	nucleus	57.82	56.95
GSMUA_Achr5P14260_001	Banana	cytosol	58.02	56.72
Bra009118.1-P	Field mustard	nucleus	56.68	56.36
CDX70145	Canola	cytosol	56.49	56.27
Zm00001d012467_P001	Maize	plasma membrane	56.68	55.83
CDX98848	Canola	cytosol	55.73	55.51
GSMUA_Achr4P18790_001	Banana	cytosol	58.59	55.42
KRH14921	Soybean	cytosol	55.34	54.21
TraesCS3B01G382000.1	Wheat	cytosol	53.63	53.32
HORVU1Hr1G070610.1	Barley	cytosol, mitochondrion, nucleus	59.35	53.16
TraesCS3A01G349400.1	Wheat	cytosol	52.86	52.66
TraesCS3D01G343400.1	Wheat	cytosol	52.48	52.48
Zm00001d041347_P001	Maize	cytosol, peroxisome, plastid	30.15	49.69
HORVU3Hr1G087800.9	Barley	cytosol	54.2	49.31
TraesCS4B01G365800.1	Wheat	plastid	26.14	47.9
EES09088	Sorghum	cytosol	45.99	46.89
TraesCS5D01G158200.2	Wheat	cytosol	45.23	46.02
EES16490	Sorghum	cytosol	45.23	45.84
TraesCS5A01G152900.1	Wheat	cytosol	44.85	45.63
TraesCS5B01G151700.1	Wheat	cytosol	44.66	45.44
Zm00001d023220_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	44.08	44.85

Protein Annotations

EnsemblPlants:Solyc04g079270.2.1	EnsemblPlantsGene:Solyc04g079270.2	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0019867	InterPro:Bac_surfAg_D15	InterPro:BamA/TamA_POTRA	PANTHER:PTHR12815	PANTHER:PTHR12815:SF15
PFAM:PF01103	PFAM:PF07244	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002766FE2	UniProt:K4BV11
MapMan:23.2.2.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:63783712..63788570

Molecular Weight (calculated)

57921.6 Da

IEP (calculated)

9.928

GRAVY (calculated)

-0.123

Length

524 amino acids

Sequence
(BLAST)

001: MGTYMNECKN PKNLQNPTPF CFSLLILFPF FFKSSLFTYI KKRRKNCFPF AALAKMENLF RRLSSERVPI RVHDVIIQGN TKTKESLIEA EMEALKSATT
101: LQELLKAASI ANARLQHLDI FDSVKITLDS GPPELPGTTN VVVEIVESEN PLTGSVGVFS KPEARAWSLE GSLKLKNLFG YGDIWDGSLA YGLDLTSEVS
201: AGVSLPRFKK LITPVTARLS LLSQDWLKFS SYKERALGLS LGLLSSRSHD LSYSLAWRTL ADPSQMSSRA VRRQLGHSLI SALKYTFKID RRNSPLRPTR
301: GYAFLSSSQI GGLLPDHRGL RFLRQELDFR YALPLGFYNA AFNIGISAGV TVPWGSGFLS RPTYLPEKFF LGGNSSPVCA LGGPSSLLGF KTRGLGPAEP
401: RRQVTENSND ESSDASSAID FVGGDLAVTA FADLSFDLPL RVLREAGIHG HAFACTGSLN KLTENAYKDL SLQKFKESFR ASAGFGVIVP TKLFRMEVNY
501: CYILKQQEHD RGKTGVQFSF SSSF

Best Arabidopsis Sequence Match ( AT5G05520.1 )
(BLAST)

001: MENPAEKPDP NPSKPKIESE DEREELGDIN GDEEEEEEYE EEDDGKPRTR EDAIADRIKA ESLFRRMRAT PVAVRVHDVI VKGNEKTKDH VIEAEVDVVR
101: QATTLQELLK ASKVANFNLQ ALDIFDSVKI TLDSGPPELP GTTNVVIDVV ESKSPITGQI GTFTKAEARS SSLEGSLKYK NIFGYGDIWD GSLAYGCDHS
201: AEVGLGMYLP RFRGRPTPFT SRVYLSTQDW LKFSSYKERA LGLSLGLIAS KYHELAYNIA WRNLIDPSQM ASRSIRRQLG HNLVSALKYT FKFDQRNSSL
301: RPTRGYSFIS TSQIGGLAPD SRTLRFLRQE IDLRYAVPLG FYRAALNFGI AGGITFPWGS GYKSRASCVP ERFFLGGNIS PVCSLGGPSA LWGFKTRGLG
401: PNEPRREVQD DESGDTYERD FVGGDVAVTA FADLSFDFPL KWFRDRGIHG HVFACAGNMA ELSENKYRNF TAPKLLETFR SSVGAGIVVP TSLFRMELNY
501: CHILKKQEHD RAKSGFFMTF STSS

Arabidopsis Description

Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.