Factsheet for VIT_13s0067g01510.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020747	Potato	mitochondrion	65.73	66.98
Solyc04g079270.2.1	Tomato	endoplasmic reticulum, nucleus	64.61	65.84
Os05t0470800-01	Rice	mitochondrion	59.18	60.77
KRG97698	Soybean	nucleus	60.11	60.57
KRH31173	Soybean	nucleus	59.74	60.42
CDY00993	Canola	cytosol	55.99	60.4
CDY00721	Canola	nucleus	56.93	60.32
Bra001389.1-P	Field mustard	nucleus	57.3	60.0
Zm00001d010590_P001	Maize	plasma membrane	58.99	59.77
GSMUA_Achr5P14260_001	Banana	cytosol	59.74	59.51
EES19675	Sorghum	cytosol	58.99	59.43
CDX73892	Canola	nucleus	56.74	59.41
AT5G05520.1	Thale cress	cytosol	58.24	59.35
AT3G11070.1	Thale cress	nucleus	57.49	59.04
KRH73273	Soybean	nucleus	58.8	59.02
GSMUA_Achr4P18790_001	Banana	cytosol	61.05	58.84
CDY08552	Canola	cytosol	55.24	58.76
Bra034868.1-P	Field mustard	cytosol	55.24	58.76
KRH14921	Soybean	cytosol	58.24	58.13
EES01699	Sorghum	cytosol	57.68	57.57
Zm00001d012467_P001	Maize	plasma membrane	57.3	57.52
TraesCS2A01G102400.1	Wheat	mitochondrion	30.15	57.5
TraesCS2D01G101900.1	Wheat	cytosol	54.68	56.15
TraesCS1A01G296200.1	Wheat	cytosol	54.12	55.68
TraesCS2B01G119500.1	Wheat	mitochondrion	51.5	55.33
TraesCS1B01G305000.1	Wheat	cytosol	53.0	55.27
TraesCS1D01G295900.1	Wheat	cytosol	53.75	54.88
TraesCS3B01G382000.1	Wheat	cytosol	53.75	54.46
TraesCS3A01G349400.1	Wheat	cytosol	53.18	53.99
TraesCS3D01G343400.1	Wheat	cytosol	52.62	53.63
CDX70145	Canola	cytosol	52.81	53.61
Bra009118.1-P	Field mustard	nucleus	52.81	53.51
CDX98848	Canola	cytosol	52.06	52.85
Zm00001d041347_P001	Maize	cytosol, peroxisome, plastid	30.9	51.89
HORVU1Hr1G070610.1	Barley	cytosol, mitochondrion, nucleus	54.87	50.09
HORVU3Hr1G087800.9	Barley	cytosol	53.56	49.65
EES16490	Sorghum	cytosol	46.25	47.78
EES09088	Sorghum	cytosol	45.88	47.67
TraesCS4B01G365800.1	Wheat	plastid	25.28	47.2
TraesCS5D01G158200.2	Wheat	cytosol	45.51	47.18
TraesCS5A01G152900.1	Wheat	cytosol	45.32	46.99
TraesCS5B01G151700.1	Wheat	cytosol	45.32	46.99
Zm00001d023220_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	44.38	46.02

Protein Annotations

EntrezGene:100258670	wikigene:100258670	Gene3D:2.40.160.50	MapMan:23.2.2.1	Gene3D:3.10.20.310	InterPro:Bac_surfAg_D15
InterPro:BamA/TamA_POTRA	ProteinID:CCB49846	ProteinID:CCB49846.1	ncoils:Coil	UniProt:F6HC92	EMBL:FN595514
GO:GO:0005575	GO:GO:0016020	GO:GO:0019867	EntrezGene:LOC100258670	wikigene:LOC100258670	PFAM:PF01103
PFAM:PF07244	PANTHER:PTHR12815	PANTHER:PTHR12815:SF15	UniParc:UPI00019845ED	ArrayExpress:VIT_13s0067g01510	EnsemblPlantsGene:VIT_13s0067g01510
EnsemblPlants:VIT_13s0067g01510.t01	unigene:Vvi.1785	RefSeq:XP_002273082	RefSeq:XP_002273082.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:-:846057..861112

Molecular Weight (calculated)

59205.1 Da

IEP (calculated)

5.445

GRAVY (calculated)

-0.358

Length

534 amino acids

Sequence
(BLAST)

001: MALKENQEET PISENPNGDE EGGEESQADG VGDFEDEDED EAEEEDEEEE ARSEKSRESR LAEDGSKLES MFRRLASEKV KLRVHDVLIK GNTKTKDSLI
101: EAELEAIKNA TTMQELLKAA GIANHRFHSF GIFDSVGITL DCGPPELPGT VNVIVDVVET KNPLTGDLGI FTKPEARTWS LEGSLKLKNL FGYGDLWDGS
201: LVYGWDQSSE ISAGVSLPRF KGMVTPMLAR VSLLSQDWLK FSSYKERSLG LNLGLISTKR HDLTYNLLWR TLTDPSQMSS RAVRRQLGHG LLSSLKYTFR
301: IDNRNSVLRP TQGYAFISTS QIGGLVPDYR SLRFLRQEID LRCAIPLGFY RTALNLGISG GVIFPWGNGA LSMPSSLPER FFLGGNSSPV CTLGGPTTLL
401: GFKSRGLGPT ERRRLIRDKS NGENSETSGR DVIGGDLAVT AFADLSFDLP LKLFRDAGIH GHVFACAGNL TKLTENEFRK FSFQKFLDSF RSSAGFGIIV
501: PTKLFRMEVN YCYILKQFEH DHGRTGVQFS FSAT

Best Arabidopsis Sequence Match ( AT5G05520.1 )
(BLAST)

001: MENPAEKPDP NPSKPKIESE DEREELGDIN GDEEEEEEYE EEDDGKPRTR EDAIADRIKA ESLFRRMRAT PVAVRVHDVI VKGNEKTKDH VIEAEVDVVR
101: QATTLQELLK ASKVANFNLQ ALDIFDSVKI TLDSGPPELP GTTNVVIDVV ESKSPITGQI GTFTKAEARS SSLEGSLKYK NIFGYGDIWD GSLAYGCDHS
201: AEVGLGMYLP RFRGRPTPFT SRVYLSTQDW LKFSSYKERA LGLSLGLIAS KYHELAYNIA WRNLIDPSQM ASRSIRRQLG HNLVSALKYT FKFDQRNSSL
301: RPTRGYSFIS TSQIGGLAPD SRTLRFLRQE IDLRYAVPLG FYRAALNFGI AGGITFPWGS GYKSRASCVP ERFFLGGNIS PVCSLGGPSA LWGFKTRGLG
401: PNEPRREVQD DESGDTYERD FVGGDVAVTA FADLSFDFPL KWFRDRGIHG HVFACAGNMA ELSENKYRNF TAPKLLETFR SSVGAGIVVP TSLFRMELNY
501: CHILKKQEHD RAKSGFFMTF STSS

Arabidopsis Description

Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.