Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00721 | Canola | nucleus | 81.15 | 83.73 |
| Bra001389.1-P | Field mustard | nucleus | 81.15 | 82.75 |
| CDX73892 | Canola | nucleus | 80.77 | 82.35 |
| CDY00993 | Canola | cytosol | 77.69 | 81.62 |
| Bra034868.1-P | Field mustard | cytosol | 77.5 | 80.28 |
| CDY08552 | Canola | cytosol | 77.5 | 80.28 |
| AT5G05520.1 | Thale cress | cytosol | 75.96 | 75.38 |
| PGSC0003DMT400020747 | Potato | mitochondrion | 59.04 | 58.59 |
| Solyc04g079270.2.1 | Tomato | endoplasmic reticulum, nucleus | 58.27 | 57.82 |
| VIT_13s0067g01510.t01 | Wine grape | cytosol | 59.04 | 57.49 |
| KRG97698 | Soybean | nucleus | 56.35 | 55.28 |
| Os05t0470800-01 | Rice | mitochondrion | 54.81 | 54.81 |
| KRH31173 | Soybean | nucleus | 55.58 | 54.73 |
| TraesCS2A01G102400.1 | Wheat | mitochondrion | 29.04 | 53.93 |
| Zm00001d010590_P001 | Maize | plasma membrane | 54.23 | 53.51 |
| EES19675 | Sorghum | cytosol | 54.04 | 53.02 |
| Zm00001d012467_P001 | Maize | plasma membrane | 54.04 | 52.82 |
| EES01699 | Sorghum | cytosol | 54.23 | 52.71 |
| TraesCS3A01G349400.1 | Wheat | cytosol | 53.27 | 52.66 |
| TraesCS3B01G382000.1 | Wheat | cytosol | 53.08 | 52.37 |
| TraesCS1B01G305000.1 | Wheat | cytosol | 51.54 | 52.34 |
| KRH73273 | Soybean | nucleus | 53.46 | 52.26 |
| GSMUA_Achr5P14260_001 | Banana | cytosol | 53.85 | 52.24 |
| TraesCS1A01G296200.1 | Wheat | cytosol | 51.73 | 51.83 |
| TraesCS1D01G295900.1 | Wheat | cytosol | 52.12 | 51.82 |
| TraesCS3D01G343400.1 | Wheat | cytosol | 51.54 | 51.15 |
| KRH14921 | Soybean | cytosol | 51.92 | 50.47 |
| GSMUA_Achr4P18790_001 | Banana | cytosol | 53.46 | 50.18 |
| TraesCS2B01G119500.1 | Wheat | mitochondrion | 47.88 | 50.1 |
| TraesCS2D01G101900.1 | Wheat | cytosol | 49.81 | 49.81 |
| HORVU3Hr1G087800.9 | Barley | cytosol | 52.31 | 47.22 |
| Zm00001d041347_P001 | Maize | cytosol, peroxisome, plastid | 28.46 | 46.54 |
| HORVU1Hr1G070610.1 | Barley | cytosol, mitochondrion, nucleus | 51.54 | 45.81 |
| TraesCS4B01G365800.1 | Wheat | plastid | 24.42 | 44.41 |
| TraesCS5D01G158200.2 | Wheat | cytosol | 42.88 | 43.3 |
| TraesCS5B01G151700.1 | Wheat | cytosol | 42.69 | 43.11 |
| TraesCS5A01G152900.1 | Wheat | cytosol | 42.5 | 42.91 |
| EES16490 | Sorghum | cytosol | 42.12 | 42.36 |
| EES09088 | Sorghum | cytosol | 41.35 | 41.83 |
| Zm00001d023220_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 40.77 | 41.16 |
Protein Annotations
| Gene3D:2.40.160.50 | MapMan:23.2.2.1 | Gene3D:3.10.20.310 | EntrezGene:820278 | ProteinID:AAF01515.1 | ProteinID:AAG50978.1 |
| ProteinID:AEE74999.1 | ArrayExpress:AT3G11070 | EnsemblPlantsGene:AT3G11070 | RefSeq:AT3G11070 | TAIR:AT3G11070 | RefSeq:AT3G11070-TAIR-G |
| EnsemblPlants:AT3G11070.1 | TAIR:AT3G11070.1 | EMBL:AY099576 | Unigene:At.39812 | EMBL:BT002158 | InterPro:Bac_surfAg_D15 |
| InterPro:BamA/TamA_POTRA | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0016020 | GO:GO:0019867 | GO:GO:0031307 | RefSeq:NP_187718.1 | PFAM:PF01103 | PFAM:PF07244 |
| PO:PO:0000293 | PO:PO:0005052 | PANTHER:PTHR12815 | PANTHER:PTHR12815:SF15 | UniProt:Q9SRL6 | UniParc:UPI00000AC638 |
| SEG:seg | : | : | : | : | : |
Description
Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SRL6]
Coordinates
chr3:+:3467704..3470233
Molecular Weight (calculated)
57211.9 Da
IEP (calculated)
5.184
GRAVY (calculated)
-0.358
Length
520 amino acids
Sequence
(BLAST)
(BLAST)
001: MANPTENLDA NPQIREPEAE EEVEELNGYE GDDGGEDDDG EDDDTESKSQ TRESGSSVDR IKAESLFRRM RAAPVPVRVH DVIIGGNEKT KDHIIEAEVD
101: AVREATTLQE LLEASRVANS NLRALDIFDS VNITLDSGPP ELPGTTNVVI DVVESKSPLT GQIGAYTRAE ARSSSVEASL KYKNIFGYGD IWDGSIVYGC
201: DNSAEVGLGM YLPRFRGLST PFTSRLFLST QDWLKFSSYK ERSLGLSLGL FSSKYHELIY TIAWRNLIDP SQAAAVSIRR QLGHSLLSAL KYTFRFDQRN
301: SSLRPTNGYA FISTSQIGGL APDSRSLRFL KQEVDLRYAV PFGFYNAAIN FGVSGGVSFP WGSGYQNRPS SIPERFFLGG NSSPVCSLSG PSALWGFKTR
401: GVGPSEPKRK GDSERDFVGG DAAVTAFADL SFDLPVRWLR ERGIHGHVFA CAGNMAKLSE NEFRNFTAPK FLETFRTSVG AGIVLPTSLF RMELNYCHIL
501: KKQEHDQARS GVFLTFSASS
101: AVREATTLQE LLEASRVANS NLRALDIFDS VNITLDSGPP ELPGTTNVVI DVVESKSPLT GQIGAYTRAE ARSSSVEASL KYKNIFGYGD IWDGSIVYGC
201: DNSAEVGLGM YLPRFRGLST PFTSRLFLST QDWLKFSSYK ERSLGLSLGL FSSKYHELIY TIAWRNLIDP SQAAAVSIRR QLGHSLLSAL KYTFRFDQRN
301: SSLRPTNGYA FISTSQIGGL APDSRSLRFL KQEVDLRYAV PFGFYNAAIN FGVSGGVSFP WGSGYQNRPS SIPERFFLGG NSSPVCSLSG PSALWGFKTR
401: GVGPSEPKRK GDSERDFVGG DAAVTAFADL SFDLPVRWLR ERGIHGHVFA CAGNMAKLSE NEFRNFTAPK FLETFRTSVG AGIVLPTSLF RMELNYCHIL
501: KKQEHDQARS GVFLTFSASS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.