Factsheet for Zm00001d012467_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01699	Sorghum	cytosol	84.4	83.93
TraesCS3B01G382000.1	Wheat	cytosol	69.17	69.83
Zm00001d010590_P001	Maize	plasma membrane	68.8	69.45
TraesCS3A01G349400.1	Wheat	cytosol	67.86	68.63
TraesCS3D01G343400.1	Wheat	cytosol	64.47	65.46
GSMUA_Achr5P14260_001	Banana	cytosol	60.15	59.7
HORVU3Hr1G087800.9	Barley	cytosol	63.72	58.85
VIT_13s0067g01510.t01	Wine grape	cytosol	57.52	57.3
PGSC0003DMT400020747	Potato	mitochondrion	56.02	56.87
Solyc04g079270.2.1	Tomato	endoplasmic reticulum, nucleus	55.83	56.68
GSMUA_Achr4P18790_001	Banana	cytosol	59.02	56.68
CDY00993	Canola	cytosol	51.88	55.76
CDY00721	Canola	nucleus	52.26	55.16
CDX73892	Canola	nucleus	52.44	54.71
Bra001389.1-P	Field mustard	nucleus	52.44	54.71
AT3G11070.1	Thale cress	nucleus	52.82	54.04
AT5G05520.1	Thale cress	cytosol	52.44	53.24
CDY08552	Canola	cytosol	50.0	52.99
Bra034868.1-P	Field mustard	cytosol	50.0	52.99
Zm00001d041347_P001	Maize	cytosol, peroxisome, plastid	31.02	51.89
KRH31173	Soybean	nucleus	50.94	51.33
KRG97698	Soybean	nucleus	50.38	50.57
CDX98848	Canola	cytosol	49.62	50.19
KRH73273	Soybean	nucleus	50.0	50.0
Bra009118.1-P	Field mustard	nucleus	49.44	49.91
CDX70145	Canola	cytosol	49.25	49.81
KRH14921	Soybean	cytosol	49.62	49.35
Zm00001d023220_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	44.92	46.41

Protein Annotations

EMBL:BT061251	EnsemblPlants:Zm00001d012467_P001	EnsemblPlants:Zm00001d012467_T001	EnsemblPlantsGene:Zm00001d012467	EntrezGene:100216624	Gene3D:2.40.160.50
Gene3D:3.10.20.310	GO:GO:0005575	GO:GO:0016020	GO:GO:0019867	InterPro:Bac_surfAg_D15	PANTHER:PTHR12815
PANTHER:PTHR12815:SF15	PFAM:PF01103	ProteinID:AQK99604.1	UniParc:UPI00019484D3	UniProt:C0HFZ5	MapMan:23.2.2.1

Description

Outer membrane OMP85 family protein

Coordinates

chr8:-:175045544..175067069

Molecular Weight (calculated)

57816.2 Da

IEP (calculated)

5.473

GRAVY (calculated)

-0.093

Length

532 amino acids

Sequence
(BLAST)

001: MAIAADSAAD QDPNPIPNEA AGESVELPAY TDHGEPNADL ADVDYEDEEE LDGVTAEAAA RDKVEAVFQR LSEAPVGIRV HDIIIKGNTK TRDALIEAEV
101: VGLIRSAVTV QDLVRTANIA AVRLRLLDVF DSVHVLLDAG PPELPGTTNV IIQVVEAANP IDGSVGCFSK PEARSWTVEG SVRWRNIFGY GDIWDASGAY
201: GWDQSSEISI GVSLPRFRSI PTPSTARASL LSHDWLKFSS YKERLLGLSF GLLSDMHHDL SYNLTWRTLT DPSQAASKSI TRQLGHNLLS ALRYTYTIDQ
301: RDSHLRPTKG YAFVSTSQVS GLWGSKGLRF FRQEFDIRGA VPLGFYNAAL NAGISAGVIL PLGRGFMESP SSVPDRFFLG GHSSPVISLC SLTSLLGFKT
401: RGVGPTELRR IVPSESVTNE STASPGWDYL GGDFAVSAFA DLSFDLPLKL FQDAGIHGHA FLSAGNLAKL SEGEFRNFSF SKFGRTFRSS AGVGIILPTK
501: LLRAEINYCY ILKQFEHDRG KTGIQFSFSS PM

Best Arabidopsis Sequence Match ( AT5G05520.1 )
(BLAST)

001: MENPAEKPDP NPSKPKIESE DEREELGDIN GDEEEEEEYE EEDDGKPRTR EDAIADRIKA ESLFRRMRAT PVAVRVHDVI VKGNEKTKDH VIEAEVDVVR
101: QATTLQELLK ASKVANFNLQ ALDIFDSVKI TLDSGPPELP GTTNVVIDVV ESKSPITGQI GTFTKAEARS SSLEGSLKYK NIFGYGDIWD GSLAYGCDHS
201: AEVGLGMYLP RFRGRPTPFT SRVYLSTQDW LKFSSYKERA LGLSLGLIAS KYHELAYNIA WRNLIDPSQM ASRSIRRQLG HNLVSALKYT FKFDQRNSSL
301: RPTRGYSFIS TSQIGGLAPD SRTLRFLRQE IDLRYAVPLG FYRAALNFGI AGGITFPWGS GYKSRASCVP ERFFLGGNIS PVCSLGGPSA LWGFKTRGLG
401: PNEPRREVQD DESGDTYERD FVGGDVAVTA FADLSFDFPL KWFRDRGIHG HVFACAGNMA ELSENKYRNF TAPKLLETFR SSVGAGIVVP TSLFRMELNY
501: CHILKKQEHD RAKSGFFMTF STSS

Arabidopsis Description

Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.