CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70145	Canola	cytosol	91.64	91.64
AT5G05520.1	Thale cress	cytosol	78.33	78.63
CDY00721	Canola	nucleus	67.87	70.83
CDX73892	Canola	nucleus	68.63	70.78
CDY00993	Canola	cytosol	66.54	70.71
CDY08552	Canola	cytosol	64.64	67.73
PGSC0003DMT400020747	Potato	mitochondrion	57.6	57.82
Solyc04g079270.2.1	Tomato	endoplasmic reticulum, nucleus	55.51	55.73
Zm00001d010590_P001	Maize	plasma membrane	53.04	52.94
EES19675	Sorghum	cytosol	53.04	52.64
Os05t0470800-01	Rice	mitochondrion	51.9	52.5
KRG97698	Soybean	nucleus	52.85	52.45
KRH73273	Soybean	nucleus	53.04	52.44
VIT_13s0067g01510.t01	Wine grape	cytosol	52.85	52.06
KRH31173	Soybean	nucleus	51.71	51.52
TraesCS2A01G102400.1	Wheat	mitochondrion	27.0	50.71
KRH14921	Soybean	cytosol	51.52	50.65
TraesCS1B01G305000.1	Wheat	cytosol	49.24	50.59
GSMUA_Achr5P14260_001	Banana	cytosol	51.33	50.37
Zm00001d012467_P001	Maize	plasma membrane	50.19	49.62
TraesCS1A01G296200.1	Wheat	cytosol	48.67	49.33
TraesCS1D01G295900.1	Wheat	cytosol	48.86	49.14
EES01699	Sorghum	cytosol	49.81	48.97
TraesCS3D01G343400.1	Wheat	cytosol	48.48	48.66
TraesCS3A01G349400.1	Wheat	cytosol	48.48	48.48
TraesCS3B01G382000.1	Wheat	cytosol	48.48	48.39
GSMUA_Achr4P18790_001	Banana	cytosol	50.95	48.38
TraesCS2D01G101900.1	Wheat	cytosol	47.72	48.27
TraesCS2B01G119500.1	Wheat	mitochondrion	45.44	48.09
Zm00001d041347_P001	Maize	cytosol, peroxisome, plastid	28.71	47.48
HORVU3Hr1G087800.9	Barley	cytosol	49.81	45.49
TraesCS4B01G365800.1	Wheat	plastid	24.52	45.1
HORVU1Hr1G070610.1	Barley	cytosol, mitochondrion, nucleus	49.62	44.62
EES09088	Sorghum	cytosol	41.44	42.41
TraesCS5A01G152900.1	Wheat	cytosol	41.25	42.14
EES16490	Sorghum	cytosol	41.25	41.97
TraesCS5D01G158200.2	Wheat	cytosol	41.06	41.94
TraesCS5B01G151700.1	Wheat	cytosol	40.87	41.75
Zm00001d023220_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	40.3	41.16

Protein Annotations

EnsemblPlants:CDX98848	EnsemblPlantsGene:GSBRNA2T00106949001	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:A0A078EHM5	GO:GO:0005575
GO:GO:0016020	GO:GO:0019867	InterPro:Bac_surfAg_D15	InterPro:BamA/TamA_POTRA	PANTHER:PTHR12815	PANTHER:PTHR12815:SF15
PFAM:PF01103	PFAM:PF07244	ProteinID:CDX98848	ProteinID:CDX98848.1	SEG:seg	UniParc:UPI0004EE058E
MapMan:23.2.2.1	:	:	:	:	:

Description

BnaC09g49870D

Coordinates

chrLK031907:+:262600..264929

Molecular Weight (calculated)

58151.2 Da

IEP (calculated)

5.569

GRAVY (calculated)

-0.415

Length

526 amino acids

Sequence
(BLAST)

001: MANPADKPDP NLTTPDEGEV REEELEDIEE EEDYEGEDDN DEATASKPQT REDAAASRAN AQNLFRLMGV APVPVRVHDV IVKGNEKTKD HVIEAEVDGV
101: RQATTLQELL EAANVANFNL RALDIFDSVK ITLDAGPPEL PDTTNVVVKV VESQSPLAAE IVTSTKSQAR SSTLEGSLKY KNIFGHGDIW DTSLAYGCDN
201: SGEVGLGLYL PRLRGRPSPF TSRLYLSTQD WLKFSSYRER ALGASLGVLL SKNHELGYTL AWRNLIDPTQ MASRTIRRQI GHSLVSDLKY TFKVDERNSS
301: LRPTRGYSFV STSQIGGLVP DSRTLRFLRQ EFDLKYAVPL GFYRSALNFG VSGGITFPWG SGYKSRASSV SERFFLGGNI SPVCSLGGPS ALWGFKTRGL
401: GPNEPRREAE DDKSGDAYER DFVGGDVAVT AFADLSFDFP LRWFRERGIH GHVFACAGNM AELSGNKYRN FTAPKFMETF RSSVGAGIVL PTSLFRMELN
501: YCHIVKKQEH DRAKSGFFLT FSTPSS

Best Arabidopsis Sequence Match ( AT5G05520.1 )
(BLAST)

001: MENPAEKPDP NPSKPKIESE DEREELGDIN GDEEEEEEYE EEDDGKPRTR EDAIADRIKA ESLFRRMRAT PVAVRVHDVI VKGNEKTKDH VIEAEVDVVR
101: QATTLQELLK ASKVANFNLQ ALDIFDSVKI TLDSGPPELP GTTNVVIDVV ESKSPITGQI GTFTKAEARS SSLEGSLKYK NIFGYGDIWD GSLAYGCDHS
201: AEVGLGMYLP RFRGRPTPFT SRVYLSTQDW LKFSSYKERA LGLSLGLIAS KYHELAYNIA WRNLIDPSQM ASRSIRRQLG HNLVSALKYT FKFDQRNSSL
301: RPTRGYSFIS TSQIGGLAPD SRTLRFLRQE IDLRYAVPLG FYRAALNFGI AGGITFPWGS GYKSRASCVP ERFFLGGNIS PVCSLGGPSA LWGFKTRGLG
401: PNEPRREVQD DESGDTYERD FVGGDVAVTA FADLSFDFPL KWFRDRGIHG HVFACAGNMA ELSENKYRNF TAPKLLETFR SSVGAGIVVP TSLFRMELNY
501: CHILKKQEHD RAKSGFFMTF STSS

Arabidopsis Description

Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.