Factsheet for Zm00001d041347_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023220_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	94.03	58.06
EES09088	Sorghum	cytosol	86.79	53.7
EES16490	Sorghum	cytosol	83.96	51.64
TraesCS5A01G152900.1	Wheat	cytosol	70.75	43.69
TraesCS5D01G158200.2	Wheat	cytosol	70.44	43.5
TraesCS5B01G151700.1	Wheat	cytosol	70.44	43.5
Zm00001d010590_P001	Maize	plasma membrane	56.29	33.97
GSMUA_Achr5P14260_001	Banana	cytosol	52.52	31.16
Zm00001d012467_P001	Maize	plasma membrane	51.89	31.02
VIT_13s0067g01510.t01	Wine grape	cytosol	51.89	30.9
GSMUA_Achr4P18790_001	Banana	cytosol	53.77	30.87
CDY00993	Canola	cytosol	47.8	30.71
CDX73892	Canola	nucleus	48.43	30.2
CDY00721	Canola	nucleus	47.8	30.16
Solyc04g079270.2.1	Tomato	endoplasmic reticulum, nucleus	49.69	30.15
AT5G05520.1	Thale cress	cytosol	49.37	29.96
Bra001389.1-P	Field mustard	nucleus	47.8	29.8
PGSC0003DMT400020747	Potato	mitochondrion	49.06	29.77
Bra034868.1-P	Field mustard	cytosol	46.23	29.28
CDY08552	Canola	cytosol	46.23	29.28
KRG97698	Soybean	nucleus	48.74	29.25
KRH73273	Soybean	nucleus	48.74	29.14
Bra009118.1-P	Field mustard	nucleus	48.11	29.03
CDX70145	Canola	cytosol	47.8	28.9
CDX98848	Canola	cytosol	47.48	28.71
KRH31173	Soybean	nucleus	47.48	28.6
AT3G11070.1	Thale cress	nucleus	46.54	28.46
KRH14921	Soybean	cytosol	47.17	28.04

Protein Annotations

EnsemblPlants:Zm00001d041347_P001	EnsemblPlants:Zm00001d041347_T001	EnsemblPlantsGene:Zm00001d041347	Gene3D:2.40.160.50	GO:GO:0005575	GO:GO:0016020
GO:GO:0019867	InterPro:Bac_surfAg_D15	PANTHER:PTHR12815	PANTHER:PTHR12815:SF15	PFAM:PF01103	ProteinID:ONM32842.1
SEG:seg	UniParc:UPI0002219166	UniProt:A0A1D6MVK6	MapMan:23.2.2.1	:	:

Description

Outer membrane OMP85 family protein

Coordinates

chr3:+:113866674..113868138

Molecular Weight (calculated)

34639.7 Da

IEP (calculated)

9.414

GRAVY (calculated)

-0.148

Length

318 amino acids

Sequence
(BLAST)

001: MPRIGAIPTP LMARISFVSD DWLKSSLKEH LMGVSVDLLS TMNHNITYNL AWRKLTDPTR MPSNSAQEEL GHNLLSSIKY AYKVDRRDSS IRPARGYAFM
101: STSQVGGLAP ESKYSRFLRQ EFDLRMALPL GVLNGALNAG VAAGVIHPLE RGSAGSVSPL VERFNLGGNM PLVCHLGGPS SLLGFKTRGL RAATESRTHD
201: PNTPGNGTSP SSKLNGLGGE VAVTAFADLS FDLPLKPLRE LGIHGHAFVC AGNLGRLTEC DLRKFPATEF LQTFRSCAGW GIVVPTRLFR VEMNYCYILK
301: QLDHDGGKTD IQFNFSSS

Best Arabidopsis Sequence Match ( AT5G05520.1 )
(BLAST)

001: MENPAEKPDP NPSKPKIESE DEREELGDIN GDEEEEEEYE EEDDGKPRTR EDAIADRIKA ESLFRRMRAT PVAVRVHDVI VKGNEKTKDH VIEAEVDVVR
101: QATTLQELLK ASKVANFNLQ ALDIFDSVKI TLDSGPPELP GTTNVVIDVV ESKSPITGQI GTFTKAEARS SSLEGSLKYK NIFGYGDIWD GSLAYGCDHS
201: AEVGLGMYLP RFRGRPTPFT SRVYLSTQDW LKFSSYKERA LGLSLGLIAS KYHELAYNIA WRNLIDPSQM ASRSIRRQLG HNLVSALKYT FKFDQRNSSL
301: RPTRGYSFIS TSQIGGLAPD SRTLRFLRQE IDLRYAVPLG FYRAALNFGI AGGITFPWGS GYKSRASCVP ERFFLGGNIS PVCSLGGPSA LWGFKTRGLG
401: PNEPRREVQD DESGDTYERD FVGGDVAVTA FADLSFDFPL KWFRDRGIHG HVFACAGNMA ELSENKYRNF TAPKLLETFR SSVGAGIVVP TSLFRMELNY
501: CHILKKQEHD RAKSGFFMTF STSS

Arabidopsis Description

Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.