CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14921	Soybean	cytosol	93.42	92.9
KRH31173	Soybean	nucleus	77.82	78.41
KRG97698	Soybean	nucleus	77.63	77.92
PGSC0003DMT400020747	Potato	mitochondrion	58.08	58.97
TraesCS2A01G102400.1	Wheat	mitochondrion	31.02	58.93
VIT_13s0067g01510.t01	Wine grape	cytosol	59.02	58.8
Solyc04g079270.2.1	Tomato	endoplasmic reticulum, nucleus	56.95	57.82
Bra001389.1-P	Field mustard	nucleus	53.57	55.88
CDX73892	Canola	nucleus	53.38	55.69
CDY00721	Canola	nucleus	52.44	55.36
Os05t0470800-01	Rice	mitochondrion	53.95	55.19
AT5G05520.1	Thale cress	cytosol	54.32	55.15
CDY00993	Canola	cytosol	50.94	54.75
GSMUA_Achr5P14260_001	Banana	cytosol	55.08	54.66
TraesCS1B01G305000.1	Wheat	cytosol	52.44	54.49
TraesCS1A01G296200.1	Wheat	cytosol	52.82	54.14
TraesCS1D01G295900.1	Wheat	cytosol	53.01	53.92
TraesCS2D01G101900.1	Wheat	cytosol	52.44	53.65
AT3G11070.1	Thale cress	nucleus	52.26	53.46
TraesCS2B01G119500.1	Wheat	mitochondrion	49.62	53.12
CDX98848	Canola	cytosol	52.44	53.04
CDY08552	Canola	cytosol	49.81	52.79
Bra034868.1-P	Field mustard	cytosol	49.81	52.79
CDX70145	Canola	cytosol	51.88	52.47
EES19675	Sorghum	cytosol	52.26	52.45
Zm00001d010590_P001	Maize	plasma membrane	51.69	52.18
Bra009118.1-P	Field mustard	nucleus	51.69	52.18
GSMUA_Achr4P18790_001	Banana	cytosol	52.82	50.72
EES01699	Sorghum	cytosol	50.56	50.28
Zm00001d012467_P001	Maize	plasma membrane	50.0	50.0
TraesCS3D01G343400.1	Wheat	cytosol	49.06	49.81
TraesCS3A01G349400.1	Wheat	cytosol	48.87	49.43
TraesCS3B01G382000.1	Wheat	cytosol	48.68	49.15
Zm00001d041347_P001	Maize	cytosol, peroxisome, plastid	29.14	48.74
HORVU1Hr1G070610.1	Barley	cytosol, mitochondrion, nucleus	52.82	48.03
HORVU3Hr1G087800.9	Barley	cytosol	49.62	45.83
TraesCS4B01G365800.1	Wheat	plastid	24.62	45.8
TraesCS5A01G152900.1	Wheat	cytosol	43.42	44.85
TraesCS5D01G158200.2	Wheat	cytosol	43.42	44.85
EES09088	Sorghum	cytosol	43.23	44.75
TraesCS5B01G151700.1	Wheat	cytosol	43.23	44.66
EES16490	Sorghum	cytosol	42.48	43.71
Zm00001d023220_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	41.54	42.91

Protein Annotations

EMBL:ACUP02001273	EnsemblPlants:KRH73273	EnsemblPlantsGene:GLYMA_02G264000	EntrezGene:100802876	Gene3D:2.40.160.50	Gene3D:3.10.20.310
GO:GO:0005575	GO:GO:0016020	GO:GO:0019867	InterPro:Bac_surfAg_D15	InterPro:BamA/TamA_POTRA	PANTHER:PTHR12815
PANTHER:PTHR12815:SF15	PFAM:PF01103	PFAM:PF07244	ProteinID:KRH73273	ProteinID:KRH73273.1	SEG:seg
UniParc:UPI0002336E2E	UniProt:I1JIF2	MapMan:23.2.2.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:44932306..44936896

Molecular Weight (calculated)

59330.5 Da

IEP (calculated)

6.713

GRAVY (calculated)

-0.499

Length

532 amino acids

Sequence
(BLAST)

001: MSNTEEEEEA TPSNPNNHSQ HSTNNDVEPR DDEDIEEDDD DVVQEPNRGI PQSAASKLRE QRFKVESLSR RLSSELVPIR VHDVVINGNT KTKDWVIEAE
101: LKDIENATSM QELMQASQIA VARLQGLEIF DSCKVRLEAG PRELPNTANV IVDVVETDNK VSGEFGVYTK PSTSSWTAEG ALKYKNLLGY GDLWDASLAY
201: GANQATEVSV GVYAPRVKGF LTPIVTRISM LSQDWQESSS YKERLLGASL GLISTKHHDL AYTLGWRTLT DPSQMSSRSI RRQLGHGLVS SLKYTFKIDR
301: RNSPIRPTKG YAFLSTTHVG GLTPDPRSLR FLRQEFDVRF AVPFGFYNTA LNLGISAGAV FPWGHGFRTK SSPLPERFYL GGDFSPVCTL GGPTTLWGFK
401: TRGLGPTEPR RQNRDGSNDD NVDSSGWDFV GGDLAVTAFA DLSFDLPIRW LREHGIHGHV FAGSGNAAKL TQNEYKHFSP RKFLESFRMS VGCGVVIPTR
501: LFRLEGNYFY ILRKDEHDRG KTGFRFSFSA PS

Best Arabidopsis Sequence Match ( AT5G05520.1 )
(BLAST)

001: MENPAEKPDP NPSKPKIESE DEREELGDIN GDEEEEEEYE EEDDGKPRTR EDAIADRIKA ESLFRRMRAT PVAVRVHDVI VKGNEKTKDH VIEAEVDVVR
101: QATTLQELLK ASKVANFNLQ ALDIFDSVKI TLDSGPPELP GTTNVVIDVV ESKSPITGQI GTFTKAEARS SSLEGSLKYK NIFGYGDIWD GSLAYGCDHS
201: AEVGLGMYLP RFRGRPTPFT SRVYLSTQDW LKFSSYKERA LGLSLGLIAS KYHELAYNIA WRNLIDPSQM ASRSIRRQLG HNLVSALKYT FKFDQRNSSL
301: RPTRGYSFIS TSQIGGLAPD SRTLRFLRQE IDLRYAVPLG FYRAALNFGI AGGITFPWGS GYKSRASCVP ERFFLGGNIS PVCSLGGPSA LWGFKTRGLG
401: PNEPRREVQD DESGDTYERD FVGGDVAVTA FADLSFDFPL KWFRDRGIHG HVFACAGNMA ELSENKYRNF TAPKLLETFR SSVGAGIVVP TSLFRMELNY
501: CHILKKQEHD RAKSGFFMTF STSS

Arabidopsis Description

Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.