Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G296200.1 | Wheat | cytosol | 96.29 | 94.99 |
| TraesCS1D01G295900.1 | Wheat | cytosol | 96.88 | 94.84 |
| TraesCS2B01G119500.1 | Wheat | mitochondrion | 85.55 | 88.13 |
| HORVU1Hr1G070610.1 | Barley | cytosol, mitochondrion, nucleus | 94.14 | 82.39 |
| Os05t0470800-01 | Rice | mitochondrion | 79.49 | 78.27 |
| Zm00001d010590_P001 | Maize | plasma membrane | 77.34 | 75.14 |
| EES19675 | Sorghum | cytosol | 77.54 | 74.91 |
| TraesCS3B01G382000.1 | Wheat | cytosol | 66.41 | 64.52 |
| PGSC0003DMT400020747 | Potato | mitochondrion | 60.55 | 59.16 |
| Solyc04g079270.2.1 | Tomato | endoplasmic reticulum, nucleus | 60.16 | 58.78 |
| GSMUA_Achr5P14260_001 | Banana | cytosol | 61.52 | 58.77 |
| GSMUA_Achr4P18790_001 | Banana | cytosol | 61.13 | 56.5 |
| CDY00993 | Canola | cytosol | 53.71 | 55.56 |
| CDY00721 | Canola | nucleus | 53.71 | 54.56 |
| KRG97698 | Soybean | nucleus | 56.45 | 54.53 |
| KRH31173 | Soybean | nucleus | 56.05 | 54.36 |
| CDX73892 | Canola | nucleus | 53.91 | 54.12 |
| CDY08552 | Canola | cytosol | 52.93 | 53.98 |
| Bra034868.1-P | Field mustard | cytosol | 52.93 | 53.98 |
| Bra001389.1-P | Field mustard | nucleus | 53.71 | 53.92 |
| VIT_13s0067g01510.t01 | Wine grape | cytosol | 55.27 | 53.0 |
| AT5G05520.1 | Thale cress | cytosol | 53.91 | 52.67 |
| KRH73273 | Soybean | nucleus | 54.49 | 52.44 |
| AT3G11070.1 | Thale cress | nucleus | 52.34 | 51.54 |
| KRH14921 | Soybean | cytosol | 52.34 | 50.09 |
| Bra009118.1-P | Field mustard | nucleus | 51.17 | 49.72 |
| CDX70145 | Canola | cytosol | 50.78 | 49.43 |
| TraesCS5B01G151700.1 | Wheat | cytosol | 49.61 | 49.32 |
| TraesCS4B01G365800.1 | Wheat | plastid | 27.54 | 49.3 |
| CDX98848 | Canola | cytosol | 50.59 | 49.24 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G305000.1 | EnsemblPlantsGene:TraesCS1B01G305000 | Gene3D:2.40.160.50 | Gene3D:3.10.20.310 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0019867 | InterPro:Bac_surfAg_D15 | PANTHER:PTHR12815 | PANTHER:PTHR12815:SF15 | PFAM:PF01103 | SEG:seg |
| MapMan:23.2.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:527832692..527836372
Molecular Weight (calculated)
55733.7 Da
IEP (calculated)
5.709
GRAVY (calculated)
-0.223
Length
512 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPAADQNP KDAGDRVPEP WAGADGEVAE DEYEYEEEEL DEREKVQSVF RRLSTDPVGI RVHDVIIRGN AKTREELIEA EVADLLRSAT TVQDLLSAAA
101: DASARLRGLD VFEAVNITLD AGPPELPGTT NVVIEVVEPA IPLSGNAGVY SKPEAKAWSV EGAVKWKNLA GYADIWDASV AYGFDQTTEV GVGVSLPRFK
201: SIPTPLMARA SLLSQDWMKF SSYKERLLGL SLGLLSTRHH DLSYNLTWRS LTDPSRLAST SIRRQLGHNL LSALKYTYKI DERDSHIRPT KGYAFLSSSQ
301: VGGLWDNKGL KFFRQEFDVR AAVPFGFWNA ALNVGVGAGV VLPLARGFMN SSTPVTDRFN LGGHNSPVCS LGGISSLLGF RTRGVGPTEP RRLVPGESED
401: GSAAVPGRDY LGGDLAVSAF ADLSFDLPLK VFRDAGIHGH AFLTAGNLAK LSEGQYKNFS LDEFRRSFRS TAGVGIILPT KLFRVEVNYC YILKQSQHDS
501: GKTGIQFSFS SP
101: DASARLRGLD VFEAVNITLD AGPPELPGTT NVVIEVVEPA IPLSGNAGVY SKPEAKAWSV EGAVKWKNLA GYADIWDASV AYGFDQTTEV GVGVSLPRFK
201: SIPTPLMARA SLLSQDWMKF SSYKERLLGL SLGLLSTRHH DLSYNLTWRS LTDPSRLAST SIRRQLGHNL LSALKYTYKI DERDSHIRPT KGYAFLSSSQ
301: VGGLWDNKGL KFFRQEFDVR AAVPFGFWNA ALNVGVGAGV VLPLARGFMN SSTPVTDRFN LGGHNSPVCS LGGISSLLGF RTRGVGPTEP RRLVPGESED
401: GSAAVPGRDY LGGDLAVSAF ADLSFDLPLK VFRDAGIHGH AFLTAGNLAK LSEGQYKNFS LDEFRRSFRS TAGVGIILPT KLFRVEVNYC YILKQSQHDS
501: GKTGIQFSFS SP
001: MENPAEKPDP NPSKPKIESE DEREELGDIN GDEEEEEEYE EEDDGKPRTR EDAIADRIKA ESLFRRMRAT PVAVRVHDVI VKGNEKTKDH VIEAEVDVVR
101: QATTLQELLK ASKVANFNLQ ALDIFDSVKI TLDSGPPELP GTTNVVIDVV ESKSPITGQI GTFTKAEARS SSLEGSLKYK NIFGYGDIWD GSLAYGCDHS
201: AEVGLGMYLP RFRGRPTPFT SRVYLSTQDW LKFSSYKERA LGLSLGLIAS KYHELAYNIA WRNLIDPSQM ASRSIRRQLG HNLVSALKYT FKFDQRNSSL
301: RPTRGYSFIS TSQIGGLAPD SRTLRFLRQE IDLRYAVPLG FYRAALNFGI AGGITFPWGS GYKSRASCVP ERFFLGGNIS PVCSLGGPSA LWGFKTRGLG
401: PNEPRREVQD DESGDTYERD FVGGDVAVTA FADLSFDFPL KWFRDRGIHG HVFACAGNMA ELSENKYRNF TAPKLLETFR SSVGAGIVVP TSLFRMELNY
501: CHILKKQEHD RAKSGFFMTF STSS
101: QATTLQELLK ASKVANFNLQ ALDIFDSVKI TLDSGPPELP GTTNVVIDVV ESKSPITGQI GTFTKAEARS SSLEGSLKYK NIFGYGDIWD GSLAYGCDHS
201: AEVGLGMYLP RFRGRPTPFT SRVYLSTQDW LKFSSYKERA LGLSLGLIAS KYHELAYNIA WRNLIDPSQM ASRSIRRQLG HNLVSALKYT FKFDQRNSSL
301: RPTRGYSFIS TSQIGGLAPD SRTLRFLRQE IDLRYAVPLG FYRAALNFGI AGGITFPWGS GYKSRASCVP ERFFLGGNIS PVCSLGGPSA LWGFKTRGLG
401: PNEPRREVQD DESGDTYERD FVGGDVAVTA FADLSFDFPL KWFRDRGIHG HVFACAGNMA ELSENKYRNF TAPKLLETFR SSVGAGIVVP TSLFRMELNY
501: CHILKKQEHD RAKSGFFMTF STSS
Arabidopsis Description
Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.