CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73892	Canola	nucleus	95.44	94.31
CDY00993	Canola	cytosol	83.13	84.65
CDY08552	Canola	cytosol	83.33	83.67
AT3G11070.1	Thale cress	nucleus	83.73	81.15
CDX98848	Canola	cytosol	70.83	67.87
CDX70145	Canola	cytosol	70.04	67.11
PGSC0003DMT400020747	Potato	mitochondrion	60.12	57.82
VIT_13s0067g01510.t01	Wine grape	cytosol	60.32	56.93
Solyc04g079270.2.1	Tomato	endoplasmic reticulum, nucleus	58.73	56.49
EES19675	Sorghum	cytosol	58.53	55.66
Zm00001d010590_P001	Maize	plasma membrane	58.13	55.6
KRH31173	Soybean	nucleus	57.94	55.3
KRG97698	Soybean	nucleus	58.13	55.28
TraesCS2A01G102400.1	Wheat	mitochondrion	30.56	55.0
Os05t0470800-01	Rice	mitochondrion	55.75	54.04
TraesCS1B01G305000.1	Wheat	cytosol	54.56	53.71
TraesCS1A01G296200.1	Wheat	cytosol	54.56	52.99
TraesCS1D01G295900.1	Wheat	cytosol	54.76	52.77
GSMUA_Achr5P14260_001	Banana	cytosol	55.95	52.61
KRH73273	Soybean	nucleus	55.36	52.44
EES01699	Sorghum	cytosol	55.56	52.34
Zm00001d012467_P001	Maize	plasma membrane	55.16	52.26
TraesCS3B01G382000.1	Wheat	cytosol	54.56	52.18
GSMUA_Achr4P18790_001	Banana	cytosol	57.34	52.17
TraesCS3A01G349400.1	Wheat	cytosol	54.37	52.09
TraesCS2D01G101900.1	Wheat	cytosol	53.17	51.54
TraesCS2B01G119500.1	Wheat	mitochondrion	50.79	51.51
KRH14921	Soybean	cytosol	54.56	51.4
TraesCS3D01G343400.1	Wheat	cytosol	52.38	50.38
Zm00001d041347_P001	Maize	cytosol, peroxisome, plastid	30.16	47.8
HORVU3Hr1G087800.9	Barley	cytosol	54.17	47.4
HORVU1Hr1G070610.1	Barley	cytosol, mitochondrion, nucleus	54.56	47.01
TraesCS4B01G365800.1	Wheat	plastid	25.99	45.8
TraesCS5D01G158200.2	Wheat	cytosol	44.05	43.11
EES09088	Sorghum	cytosol	43.65	42.8
TraesCS5B01G151700.1	Wheat	cytosol	43.65	42.72
TraesCS5A01G152900.1	Wheat	cytosol	43.45	42.52
EES16490	Sorghum	cytosol	43.06	41.97
Zm00001d023220_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	41.87	40.97

Protein Annotations

EnsemblPlants:CDY00721	EnsemblPlantsGene:GSBRNA2T00110573001	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:A0A078EHY9	GO:GO:0005575
GO:GO:0016020	GO:GO:0019867	InterPro:Bac_surfAg_D15	InterPro:BamA/TamA_POTRA	PANTHER:PTHR12815	PANTHER:PTHR12815:SF15
PFAM:PF01103	PFAM:PF07244	ProteinID:CDY00721	ProteinID:CDY00721.1	SEG:seg	UniParc:UPI0004EB9B34
MapMan:23.2.2.1	:	:	:	:	:

Description

BnaC03g37050D

Coordinates

chrLK031921:-:482273..484564

Molecular Weight (calculated)

55697.3 Da

IEP (calculated)

5.415

GRAVY (calculated)

-0.425

Length

504 amino acids

Sequence
(BLAST)

001: MANPTENLDP NPPTREPEDE VEEDEEEEEE GEGEEEDDDA VSNPQSLKTE SLFRRMRSAP VPVRVHDVIV KGNTKTKDHI IEAEVDAVRE ASTLQELLEA
101: SRVANSNLRA LDVFDSVNVT LDSGPPELPG TTNVIIEVVE SKSPLTGQVG AYTRAEAKSS SVEASLKYKN IFGYGDIWDG SVIYGCDNSA EVGMGMYLPR
201: FKGLPTPFSS RLYLSTQDWL KFSSYKERSL GLSLGLLSSK YHELVYTVGW RNLIDPSRSA SKSIRRQLGH SLLSALKYTF KYDQRDSYLR PTSGYAFSST
301: SQIGGLAPDS RSLRFLKQEI DLRCAFPFGF YNAALNLGVS GGVTFPWGSG YQNRPSSVPE RFFLGGNSSP VCSLGGPSAL WGFKTRGVGH NEPKRKGDDE
401: RDFIGGDAAV TAFADLSFDL PVRWLRERGV HGHVFACAGN MAKLTENEFR NVTAPKLLET FRTSVGTGIV LPTSLFRMEI NYCHILKKQE HDKAKSGFFL
501: TFSA

Best Arabidopsis Sequence Match ( AT3G11070.1 )
(BLAST)

001: MANPTENLDA NPQIREPEAE EEVEELNGYE GDDGGEDDDG EDDDTESKSQ TRESGSSVDR IKAESLFRRM RAAPVPVRVH DVIIGGNEKT KDHIIEAEVD
101: AVREATTLQE LLEASRVANS NLRALDIFDS VNITLDSGPP ELPGTTNVVI DVVESKSPLT GQIGAYTRAE ARSSSVEASL KYKNIFGYGD IWDGSIVYGC
201: DNSAEVGLGM YLPRFRGLST PFTSRLFLST QDWLKFSSYK ERSLGLSLGL FSSKYHELIY TIAWRNLIDP SQAAAVSIRR QLGHSLLSAL KYTFRFDQRN
301: SSLRPTNGYA FISTSQIGGL APDSRSLRFL KQEVDLRYAV PFGFYNAAIN FGVSGGVSFP WGSGYQNRPS SIPERFFLGG NSSPVCSLSG PSALWGFKTR
401: GVGPSEPKRK GDSERDFVGG DAAVTAFADL SFDLPVRWLR ERGIHGHVFA CAGNMAKLSE NEFRNFTAPK FLETFRTSVG AGIVLPTSLF RMELNYCHIL
501: KKQEHDQARS GVFLTFSASS

Arabidopsis Description

Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SRL6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.