CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08552	Canola	cytosol	87.27	86.06
CDY00721	Canola	nucleus	84.65	83.13
CDX73892	Canola	nucleus	84.85	82.35
AT3G11070.1	Thale cress	nucleus	81.62	77.69
CDX70145	Canola	cytosol	71.92	67.68
CDX98848	Canola	cytosol	70.71	66.54
PGSC0003DMT400020747	Potato	mitochondrion	61.01	57.63
Solyc04g079270.2.1	Tomato	endoplasmic reticulum, nucleus	60.81	57.44
TraesCS2A01G102400.1	Wheat	mitochondrion	31.92	56.43
VIT_13s0067g01510.t01	Wine grape	cytosol	60.4	55.99
Zm00001d010590_P001	Maize	plasma membrane	59.19	55.6
EES19675	Sorghum	cytosol	58.79	54.91
Os05t0470800-01	Rice	mitochondrion	57.58	54.81
TraesCS1B01G305000.1	Wheat	cytosol	55.56	53.71
KRG97698	Soybean	nucleus	57.37	53.58
TraesCS1A01G296200.1	Wheat	cytosol	55.96	53.37
TraesCS1D01G295900.1	Wheat	cytosol	56.16	53.15
KRH31173	Soybean	nucleus	56.57	53.03
GSMUA_Achr5P14260_001	Banana	cytosol	56.77	52.43
EES01699	Sorghum	cytosol	56.57	52.34
TraesCS2D01G101900.1	Wheat	cytosol	54.55	51.92
Zm00001d012467_P001	Maize	plasma membrane	55.76	51.88
TraesCS2B01G119500.1	Wheat	mitochondrion	51.92	51.71
TraesCS3B01G382000.1	Wheat	cytosol	54.75	51.42
GSMUA_Achr4P18790_001	Banana	cytosol	57.17	51.08
TraesCS3D01G343400.1	Wheat	cytosol	53.94	50.95
TraesCS3A01G349400.1	Wheat	cytosol	54.14	50.95
KRH73273	Soybean	nucleus	54.75	50.94
KRH14921	Soybean	cytosol	53.94	49.91
Zm00001d041347_P001	Maize	cytosol, peroxisome, plastid	30.71	47.8
HORVU3Hr1G087800.9	Barley	cytosol	55.15	47.4
HORVU1Hr1G070610.1	Barley	cytosol, mitochondrion, nucleus	55.56	47.01
TraesCS4B01G365800.1	Wheat	plastid	26.87	46.5
TraesCS5D01G158200.2	Wheat	cytosol	45.86	44.08
TraesCS5B01G151700.1	Wheat	cytosol	45.66	43.88
TraesCS5A01G152900.1	Wheat	cytosol	45.45	43.69
EES09088	Sorghum	cytosol	43.43	41.83
Zm00001d023220_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	42.83	41.16
EES16490	Sorghum	cytosol	42.83	41.01

Protein Annotations

EnsemblPlants:CDY00993	EnsemblPlantsGene:GSBRNA2T00111012001	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:A0A078END5	GO:GO:0005575
GO:GO:0016020	GO:GO:0019867	InterPro:Bac_surfAg_D15	InterPro:BamA/TamA_POTRA	PANTHER:PTHR12815	PANTHER:PTHR12815:SF15
PFAM:PF01103	PFAM:PF07244	ProteinID:CDY00993	ProteinID:CDY00993.1	SEG:seg	UniParc:UPI0004EC1E12
MapMan:23.2.2.1	:	:	:	:	:

Description

BnaC05g42070D

Coordinates

chrLK031923:+:519621..522039

Molecular Weight (calculated)

54707.4 Da

IEP (calculated)

6.145

GRAVY (calculated)

-0.308

Length

495 amino acids

Sequence
(BLAST)

001: MANPTENPPN REPKYELDID EGELEEAEDE DDTASNPRTE SLFRRMRSAP VPVRVHDVIV KGNEKTKDHI IEAEVEAVIR EANTLQELLE ASRVANSNLR
101: ALDIFDSVNI TLDSGPPELP GTTNVVIEVV ESKNPLTGQI GAYTKAEAKS SSVEASLKYK NIFGYGDIWD GSMVYGLDSS AEVGLGMYLP RFKALPTPFS
201: SRLYLSTQDW LKFSSYEERS LGLSLGLLSS KYHELVYTVA WRSLIDPSRL ASESIRRQLG HSLLSALKYT FKYDQRDSYL RPTSGYAFSS TSQVGGLAPD
301: SRSLRFFKQE IDLRCAVPLG FYAAALNFGV SGGVTFPWGS GYKNRASSVP ERFFLGGNSS PVCSLSGPSA LWGFSTRGLG PNEARRRGDV ERDFVGGDAA
401: VTAFADLSFD LPVRWLRERG VHGHVFACAG NTAKLTENEF RNFSGPKFLE TFRTSVGAGI VLPVSLFRME INYCHIVKKQ EHDRAKSGFF LTFSA

Best Arabidopsis Sequence Match ( AT3G11070.1 )
(BLAST)

001: MANPTENLDA NPQIREPEAE EEVEELNGYE GDDGGEDDDG EDDDTESKSQ TRESGSSVDR IKAESLFRRM RAAPVPVRVH DVIIGGNEKT KDHIIEAEVD
101: AVREATTLQE LLEASRVANS NLRALDIFDS VNITLDSGPP ELPGTTNVVI DVVESKSPLT GQIGAYTRAE ARSSSVEASL KYKNIFGYGD IWDGSIVYGC
201: DNSAEVGLGM YLPRFRGLST PFTSRLFLST QDWLKFSSYK ERSLGLSLGL FSSKYHELIY TIAWRNLIDP SQAAAVSIRR QLGHSLLSAL KYTFRFDQRN
301: SSLRPTNGYA FISTSQIGGL APDSRSLRFL KQEVDLRYAV PFGFYNAAIN FGVSGGVSFP WGSGYQNRPS SIPERFFLGG NSSPVCSLSG PSALWGFKTR
401: GVGPSEPKRK GDSERDFVGG DAAVTAFADL SFDLPVRWLR ERGIHGHVFA CAGNMAKLSE NEFRNFTAPK FLETFRTSVG AGIVLPTSLF RMELNYCHIL
501: KKQEHDQARS GVFLTFSASS

Arabidopsis Description

Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SRL6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.