CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012467_P001	Maize	plasma membrane	83.93	84.4
EES19675	Sorghum	cytosol	71.22	71.89
TraesCS3D01G343400.1	Wheat	cytosol	68.97	70.42
TraesCS3B01G382000.1	Wheat	cytosol	66.17	67.17
TraesCS3A01G349400.1	Wheat	cytosol	65.05	66.16
HORVU3Hr1G087800.9	Barley	cytosol	67.85	63.02
GSMUA_Achr5P14260_001	Banana	cytosol	60.93	60.82
PGSC0003DMT400020747	Potato	mitochondrion	57.76	58.97
Solyc04g079270.2.1	Tomato	endoplasmic reticulum, nucleus	57.38	58.59
GSMUA_Achr4P18790_001	Banana	cytosol	59.81	57.76
VIT_13s0067g01510.t01	Wine grape	cytosol	57.57	57.68
CDY00993	Canola	cytosol	52.34	56.57
CDY00721	Canola	nucleus	52.34	55.56
Bra001389.1-P	Field mustard	nucleus	51.78	54.31
CDX73892	Canola	nucleus	51.78	54.31
AT3G11070.1	Thale cress	nucleus	52.71	54.23
AT5G05520.1	Thale cress	cytosol	52.52	53.63
Bra034868.1-P	Field mustard	cytosol	49.53	52.79
CDY08552	Canola	cytosol	49.53	52.79
KRG97698	Soybean	nucleus	50.84	51.32
KRH31173	Soybean	nucleus	50.47	51.14
KRH73273	Soybean	nucleus	50.28	50.56
Bra009118.1-P	Field mustard	nucleus	49.53	50.28
CDX70145	Canola	cytosol	49.35	50.19
KRH14921	Soybean	cytosol	49.91	49.91
CDX98848	Canola	cytosol	48.97	49.81
EES09088	Sorghum	cytosol	46.73	48.64
EES16490	Sorghum	cytosol	46.17	47.78

Protein Annotations

EnsemblPlants:EES01699	EnsemblPlantsGene:SORBI_3003G343200	EntrezGene:8085419	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:GO:0005575
GO:GO:0016020	GO:GO:0019867	InterPro:Bac_surfAg_D15	ncoils:Coil	PANTHER:PTHR12815	PANTHER:PTHR12815:SF15
PFAM:PF01103	ProteinID:EES01699	ProteinID:EES01699.1	RefSeq:XP_002456579.1	SEG:seg	UniParc:UPI0001A845EF
UniProt:C5XNY7	MapMan:23.2.2.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:66518857..66523679

Molecular Weight (calculated)

58186.5 Da

IEP (calculated)

5.490

GRAVY (calculated)

-0.151

Length

535 amino acids

Sequence
(BLAST)

001: MVIAADSAAD QDPNPVPDEA AGESVEAPAY PDHGEPNADA ADVEYEDEEE ELDGEAAEAA AREKVEAVFR RLSEAPVGIR VHEVIIKGNT KTRDALIEAE
101: VVGLIRSAAT VQDLVRTASI ANARLRRLDV FDSVHVLLDA GPPELPGTTN VVIEVVEAAN PIHGSVGCFS KPEARSWTVE GSVRWKNIFG YGDIWDASGA
201: YGWDQSSEIG IGVSLPRFRS ITTPLTARAS LLSHDWLKFS SYKERLLGLS FGLFSDVHHD LSYSLTWRTL TDPSQEASKS IRRQLGHNLL SALRYTYTID
301: QRDSHLRPTK GYAFVSTSQV GGLWGSKGLR FFRQEFDIRG AVPLGFYNAA LNAGISAGVL LPLGRGFMES PSSVPDRFFM GGHSSPVISL GSLTSLLGFK
401: TRGVGPTELR RFVPSESVTD ESAASPGWDY LGGDFAVSAF ADLSFNLPLK LFQDAGIHGH AFLTAGNLAK LSEGEFRNFS FSKFGRTFRS SAGVGIILPT
501: KLLRVEINYC YILKQFEHDR GKTGIQFSFS SPTPM

Best Arabidopsis Sequence Match ( AT5G05520.1 )
(BLAST)

001: MENPAEKPDP NPSKPKIESE DEREELGDIN GDEEEEEEYE EEDDGKPRTR EDAIADRIKA ESLFRRMRAT PVAVRVHDVI VKGNEKTKDH VIEAEVDVVR
101: QATTLQELLK ASKVANFNLQ ALDIFDSVKI TLDSGPPELP GTTNVVIDVV ESKSPITGQI GTFTKAEARS SSLEGSLKYK NIFGYGDIWD GSLAYGCDHS
201: AEVGLGMYLP RFRGRPTPFT SRVYLSTQDW LKFSSYKERA LGLSLGLIAS KYHELAYNIA WRNLIDPSQM ASRSIRRQLG HNLVSALKYT FKFDQRNSSL
301: RPTRGYSFIS TSQIGGLAPD SRTLRFLRQE IDLRYAVPLG FYRAALNFGI AGGITFPWGS GYKSRASCVP ERFFLGGNIS PVCSLGGPSA LWGFKTRGLG
401: PNEPRREVQD DESGDTYERD FVGGDVAVTA FADLSFDFPL KWFRDRGIHG HVFACAGNMA ELSENKYRNF TAPKLLETFR SSVGAGIVVP TSLFRMELNY
501: CHILKKQEHD RAKSGFFMTF STSS

Arabidopsis Description

Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.